Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme342874g00001 ATGGAAGAAAAGGCACAAGCAACCACATTTTACTTCACCAACTTCCCGGAGGAGGTTCATCCGCAAGAGCTCAAACACAGGTTCTCAAGGTTTGGAGAAATAGTCGATTTCTTCATTCCGTCAAAAACAAACAAGTTTGGTAAACAATTCGGGTTTGTCAGATTTAGAGGAGTGGAAGATGCCGAACTTATCGAAGCTAAGATGAAGGAGGTGTGA 216 0.4259 MEEKAQATTFYFTNFPEEVHPQELKHRFSRFGEIVDFFIPSKTNKFGKQFGFVRFRGVEDAELIEAKMKEV 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme342874g00001 71 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 68 - -
Trme342874g00001 71 CDD RRM_SF 11 62 - -
Trme342874g00001 71 Gene3D - 1 61 IPR012677 -
Trme342874g00001 71 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 71 IPR000504 GO:0003723
Trme342874g00001 71 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 64 IPR000504 GO:0003723
Trme342874g00001 71 SUPERFAMILY RNA-binding domain, RBD 6 68 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme342874g00001 Trme-Chr342874 9 224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme342874g00001 8 61 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 3.88e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme342874g00001 - K12891 vvo:131648999 68.9366