Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme342600g00001 | ATGATGCTCAACTTCACGGCCCACAACCCGAACAAAAAACTCAGCATCTATTATGACAAAGTGGAGGCTCGAGCATTCTACGAAGGGTCGAGGTTTGCAAATGTCAATCTGATCACACACATTAACTCGTTTCATCAATACAAGAAAAGCAGTGACCCTATGAGTGGCGTTTTCTCAGGACAAAAATTGTTGATGCTGGACAATGATCAAATCTCTGATTTCAACAAAGACAAAAGTGTTGGGATTTATGATATCCATGTGAAACTTAACTTTAGAATTAGATTCAAACT | 290 | 0.3862 | MMLNFTAHNPNKKLSIYYDKVEARAFYEGSRFANVNLITHINSFHQYKKSSDPMSGVFSGQKLLMLDNDQISDFNKDKSVGIYDIHVKLNFRIRFKL | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme342600g00001 | 97 | Pfam | Late embryogenesis abundant protein | 5 | 97 | IPR004864 | - | |
| Trme342600g00001 | 97 | PANTHER | OS05G0367900 PROTEIN | 3 | 97 | IPR044839 | GO:0098542 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme342600g00001 | Trme-Chr342600 | 1 | 290 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme342600g00001 | 1 | 93 | SNARE and Associated Proteins | AT1G32270 | 30.526 | 2.89e-09 | 50.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme342600g00001 | - | - | gmx:100806990 | 159.073 |