Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34227g00001 ATGGGTTTAATCATTGCATGGAGACTAGCCATTGTTATGATAGCAGTTCAACCAATTATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTTAAGAACATGTCAAAAAAAGCAATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCAGAAGCTGTTTCAAATCTAAGAACCATCAATGCTTTTTCTTCTCAAGATAGAATCCTCAAAATGCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAGCATTAGACAGTCTTGGTATGCAGGTATTGGGCTTGGTTGTTCACAAAGCCTCAATTTTTGTACTTGGGCCTTGGACTTTTGGTATGGTGGAAAACTTGTTTCACAAGGTTATATTTCATCAAAGGCATTGTTTGAGACTTTTATGATTTTGGTAAGCACAGGAAGAGTTATTGCCGATGCCGGTAGCATGACTAATGATCTTGCTAAAGGCTCTGATGCCGTTGGATCGGTTTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNGTCACAAAGCCGAAAAATTAATAGGAAAAATTGAACTTCATGATGTACATTTTGCATATCCGGCTAGACCTAATGTGATGATCTTTCAAGGGTTCTCGATTAAAATTGATGCCGGAAAATCCACGGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCGACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGGATAGTGACAATTGATGGTAGAGACATAAAGTCTTATAATCTAAGGTCATTAAGGAAACATATTGCACTTGTGAGTCAAGAGCCAACATTGTTTGGTGGTACCATAAGAGAAAATATTGCATATGGAGCTTATGATGATAAAGTTGATGAGAGTGAGATTATTGAGGCATCAAAGGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAAACATTGTGTGGTGAAAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCC 1037 0.3587 MGLIIAWRLAIVMIAVQPIIICCFYTRRVLLKNMSKKAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKMLEKAQQGPSHESIRQSWYAGIGLGCSQSLNFCTWALDFWYGGKLVSQGYISSKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVXXXXXXXXXXXXXXXXXHKAEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGIVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIEASKAANAHDFISSLKDGYETLCGERGVQLSGGQKQRIAIARAILKNP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34227g00001 346 Pfam ABC transporter transmembrane region 1 134 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme34227g00001 346 Pfam ABC transporter 206 346 IPR003439 GO:0005524
Trme34227g00001 346 ProSitePatterns ABC transporters family signature. 328 342 IPR017871 GO:0005524|GO:0016887
Trme34227g00001 346 Coils Coil 31 51 - -
Trme34227g00001 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 346 IPR027417 -
Trme34227g00001 346 Coils Coil 178 183 - -
Trme34227g00001 346 SUPERFAMILY ABC transporter transmembrane region 3 160 IPR036640 GO:0005524|GO:0016020
Trme34227g00001 346 Gene3D - 177 346 IPR027417 -
Trme34227g00001 346 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 152 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme34227g00001 346 Gene3D ABC transporter type 1, transmembrane domain 1 163 IPR036640 GO:0005524|GO:0016020
Trme34227g00001 346 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 346 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34227g00001 Trme-Chr34227 80 1116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34227g00001 1 346 Calmodulin-binding Proteins AT2G36910 39.017 9.62e-72 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34227g00001 K05658 - gmx:100807709 566.614