Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34222g00001 TCTTTCTTTGAAGTGATTCTCGAGCGGTTGGCTTCAGGCGATTTCAATGACTACTTCAGCAGAAACAATCTTGATGTTGAGCTTGTTGACAAACTTAGCATTACACTCAATTCTATAAATCAAGTGCTGGAAGAAGCAGAGAAAATGCAGTACAAAAGCACATATGTAAAGAAGTGGCTTGATGATCTTAAAGATGCTATATATGAGGCGGACCAAATTTCCGATGAGATTGCTACTGATGCACAACTGAATAAGCTGAAAGCTGAATCTGATTCTGTTACCAGCACAACATTTGAATCTAGGATCAAAGAACTAATAGGGATGCTAGAACTTCTTGTGAAGCAAAAGGAAATATTGGGATTGAAAGGAGGTGCTCGGTGTGCTAGTAATGAAGGTGGCATCAGCTGGAAATCGTTGAAAAAATTGCCAACTACATTGCCAGAGGACAAAGCGAATCTACATGGTAGAGATGTTGAGAAAGAGGAAATAATCAAATTTTTACTTTCAGATAATGATGGTAGCAACCGGGTACCCGTACTCAGCATAGTCGGTTTAGGTGGGATGGGTAAGACCACCCTTGCTGAGGTTGTGTATAATGACTATAGGATTAAGGAGCATTTTGAACGTATAGCTTGGGTCTATGTTTCAGAATATTTTGATGTTGTTCGACTTACCAACGAAATAATTAGTAGGTTGGATCATTCTTTAGCAGACGGAGAGGACTTGAATCAACTCCAACAAGAACTGCATCAAAGAATAACAGGCAAGAAATATTTGCTTGTTCTAGACGATGTTCGGAATGGCAAAGATGAATGTTGGGAGCAGTTACTACTTCCCTTTAATCATGGATCTTTTGGAAGTAAGATTATTGTGACAACACGTGACAAAGAGGTAGCATCAGTAATGAAATCTGCTCAGATACTTCATTTGAAGCAACTGGAGGAAAGCGATTGTTGGAGTTTATTTGTGAGACATGCTTTTTACGGAAAAAATGTAAGCGAATATCCAAATCTTGAATCAATTGGAAGGAAAATTGTAGACAAGTGTGGAGGGTCGCCTTTAGCTGTAAGAACATTGGGGGATCTCTTGCGAATGAAATTTTCTGCAGATGAATGG 1116 0.3907 SFFEVILERLASGDFNDYFSRNNLDVELVDKLSITLNSINQVLEEAEKMQYKSTYVKKWLDDLKDAIYEADQISDEIATDAQLNKLKAESDSVTSTTFESRIKELIGMLELLVKQKEILGLKGGARCASNEGGISWKSLKKLPTTLPEDKANLHGRDVEKEEIIKFLLSDNDGSNRVPVLSIVGLGGMGKTTLAEVVYNDYRIKEHFERIAWVYVSEYFDVVRLTNEIISRLDHSLADGEDLNQLQQELHQRITGKKYLLVLDDVRNGKDECWEQLLLPFNHGSFGSKIIVTTRDKEVASVMKSAQILHLKQLEESDCWSLFVRHAFYGKNVSEYPNLESIGRKIVDKCGGSPLAVRTLGDLLRMKFSADEW 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34222g00001 372 Gene3D - 137 309 IPR027417 -
Trme34222g00001 372 Coils Coil 29 49 - -
Trme34222g00001 372 PANTHER DISEASE RESISTANCE PROTEIN RP 35 372 IPR044974 GO:0006952
Trme34222g00001 372 FunFam Probable disease resistance protein At1g61300 139 306 - -
Trme34222g00001 372 Pfam NB-ARC domain 159 372 IPR002182 GO:0043531
Trme34222g00001 372 Gene3D - 4 117 - -
Trme34222g00001 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 372 IPR027417 -
Trme34222g00001 372 Gene3D - 312 372 IPR042197 -
Trme34222g00001 372 Pfam Rx N-terminal domain 27 87 IPR041118 -
Trme34222g00001 372 PRINTS Disease resistance protein signature 179 194 - -
Trme34222g00001 372 PRINTS Disease resistance protein signature 252 266 - -
Trme34222g00001 372 PRINTS Disease resistance protein signature 349 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34222g00001 Trme-Chr34222 1 1116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34222g00001 179 360 WRKY Transcription Factor Family AT5G45050 26.486 6.09e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34222g00001 - - mtr:11414856 449.129