Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme342227g00001 ATGACAAGAGGTTTTAAGGACAAGTTGGGTGAAGGAGGCTATGGAAAGGTTTATAAGGGGAAGCTTCGCAGTGGACCTTTAGTAGCCATAAAGATGTTGGGGAAGCCTAAGGGTATTGAAAATGGACAAGATTTTGTTAGTGAAGTTGCAACTATAGGAAGAATACATCATACCAATGTGGTGCAACTTATTGGGTTTTGTGTTGAAGGATCAAAACGTGCTCTTGTTTATGATTTCATGCCAAATGGCTCTCTTGATAGATATATTTCCTCTACACGAGATCACATTTCCTT 293 0.3925 MTRGFKDKLGEGGYGKVYKGKLRSGPLVAIKMLGKPKGIENGQDFVSEVATIGRIHHTNVVQLIGFCVEGSKRALVYDFMPNGSLDRYISSTRDHIS 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme342227g00001 97 FunFam serine/threonine-protein kinase PBS1-like 1 79 - -
Trme342227g00001 97 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme342227g00001 97 Pfam Protein tyrosine and serine/threonine kinase 5 92 IPR001245 GO:0004672|GO:0006468
Trme342227g00001 97 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 91 IPR045874 GO:0004672
Trme342227g00001 97 SUPERFAMILY Protein kinase-like (PK-like) 6 94 IPR011009 -
Trme342227g00001 97 ProSiteProfiles Protein kinase domain profile. 3 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme342227g00001 97 Gene3D Transferase(Phosphotransferase) domain 1 2 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme342227g00001 Trme-Chr342227 1 293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme342227g00001 1 89 Receptor kinase-like Gene Family AT1G66980 53.933 7.28e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme342227g00001 PK_Tyr_Ser-Thr 2.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme342227g00001 - - tpra:123902866 177.948