Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34220g00001 CGATCAATGTCGTTCGTTGGGACACACGAATATCTTGCACCGGAAATTGTACGTGGTGAAGGACACGGTAGTGCTGTTGATTGGTGGACATTTGGGATATTTTTATACGAGCTTTTAACCGGAACAACGCCGTTTAAAGGTAACGGAAACCGTGCTACGCTTTTCAATGTTGTAGGACAACCTTTAAAGTTTCCAGACTATCCTTCTTGTAGTCCTATTGCTAGAGATCTTATTAAAGGATTGTTGGTTAAAGAACCTCAAAAAAGATTTGCTTATAAAAGAGGTGCTACTGAGATTAAACAACACCCATTTTTCGAAGGGGTTAATTGGGCTTTGATTCGAAGTGCTACTCCTCCTATTATACCAGAACCATTTGATTTTAGTCAGTATGTTAGTAAGGAAACTGTTGTAGCTGCTGTTGCTGATAACAAGATTGTTGATATT 444 0.3896 RSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLTGTTPFKGNGNRATLFNVVGQPLKFPDYPSCSPIARDLIKGLLVKEPQKRFAYKRGATEIKQHPFFEGVNWALIRSATPPIIPEPFDFSQYVSKETVVAAVADNKIVDI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34220g00001 148 Pfam Protein kinase domain 3 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34220g00001 148 SMART serkin_6 2 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34220g00001 148 SUPERFAMILY Protein kinase-like (PK-like) 2 134 IPR011009 -
Trme34220g00001 148 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34220g00001 148 FunFam Serine/threonine-protein kinase AGC1-7 1 123 - -
Trme34220g00001 148 Gene3D Transferase(Phosphotransferase) domain 1 2 123 - -
Trme34220g00001 148 PANTHER FLIPPASE KINASE 1-RELATED 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34220g00001 Trme-Chr34220 673 1116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34220g00001 1 142 AGC Kinase Gene Family AT1G79250 79.577 3.86e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme34220g00001 Pkinase 2.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34220g00001 - - vvo:131616903 268.855