Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme3421g00001 | CGTCAGAAAGAGAAGGCAAACTCATCAGTAAGTGAGTTGGTGGAAGCAGTGAGCAAAAGACCAAGGTCACTCAGTGAATCAACAAACCATCTTCCCTTCATCAAAACCCCAACAACGGTACTACGCGGTGGTGGCGGATCAGGAGGTGACACTTTTAATGCAATGCACTCCATCACCGAGACCCCCGAAAACAAAAACAACTCGCGTCGCCGTTCTTTCATGGGGTTGATCAGGAAAAGTCAATCAAACAATGAAAGCTTCAATGATGATGAACAAGTTATTGATGAGGATAGCTCTGAGGATGATGAAAGGTCTGATAGTTTTGATGACAAAATCACAAAAAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACTACACTCGAACGTATCGAAAAGAATTTTGTCATTACTGATCCAAGGCTCCCTGATAACCCCATTATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAGTATTCTCGAGAAGAAATATTGGGAAGAAATTGCAGGTTTCTACAAGGACCTGAAACAGATCCTGCAACAGTGAAAAAAATTAGACATGCTATTGACAATCAAACAGAAGTTACTGTGCAACTTATTAATTATACAAAGAGTG | 619 | 0.4087 | RQKEKANSSVSELVEAVSKRPRSLSESTNHLPFIKTPTTVLRGGGGSGGDTFNAMHSITETPENKNNSRRRSFMGLIRKSQSNNESFNDDEQVIDEDSSEDDERSDSFDDKITKKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIRHAIDNQTEVTVQLINYTKS | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme3421g00001 | 206 | MobiDBLite | consensus disorder prediction | 89 | 104 | - | - | |
| Trme3421g00001 | 206 | Pfam | PAS domain | 143 | 205 | IPR000014 | - | |
| Trme3421g00001 | 206 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 136 | 206 | IPR035965 | - | |
| Trme3421g00001 | 206 | CDD | PAS | 135 | 206 | IPR000014 | - | |
| Trme3421g00001 | 206 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
| Trme3421g00001 | 206 | ProSiteProfiles | PAS repeat profile. | 120 | 193 | IPR000014 | - | |
| Trme3421g00001 | 206 | PANTHER | PROTEIN TWIN LOV 1 | 60 | 206 | - | - | |
| Trme3421g00001 | 206 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Trme3421g00001 | 206 | MobiDBLite | consensus disorder prediction | 52 | 88 | - | - | |
| Trme3421g00001 | 206 | Gene3D | PAS domain | 117 | 206 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme3421g00001 | Trme-Chr3421 | 200 | 1799 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme3421g00001 | 1 | 206 | AGC Kinase Gene Family | AT3G45780 | 63.393 | 4.62e-73 | 236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme3421g00001 | K20715 | - | tcc:18590813 | 249.21 |