Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34184g00001 GTGGATTGGACCCCAGAATTGCATAGAAGATTCGTACAAGCAGTGGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCTAGTCACCTTCAAGTATAG 147 0.449 VDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQV 48
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34184g00001 48 FunFam Two-component response regulator 1 48 - -
Trme34184g00001 48 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 47 IPR044825 GO:0003700|GO:0045893
Trme34184g00001 48 NCBIfam myb-like DNA-binding domain, SHAQKYF class 1 48 IPR006447 GO:0003677
Trme34184g00001 48 Pfam Myb-like DNA-binding domain 2 47 IPR001005 -
Trme34184g00001 48 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 48 IPR017930 -
Trme34184g00001 48 Gene3D - 1 48 - -
Trme34184g00001 48 SUPERFAMILY Homeodomain-like 2 47 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34184g00001 Trme-Chr34184 520 666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34184g00001 1 47 G2-like Transcription Factor Family AT5G44190 87.234 8.13e-25 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme34184g00001 Myb_DNA-binding 3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34184g00001 - - oeu:111395458 100.138