Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34118g00001 ATGGACAATCTTTCTAATTCAAAGAATATTGTTGAGTGTGAGAGTAAAAGCATAGAGAATAGAGAAGAGCAAGAAACTTTAGAAGATGAAGAAGAAAGCTTCTCATATGCTATGCAGCTTGCAATCTCTATTGCACTTCCCATGGCACTTCAATCTGCAATTGAGCTTGGAGTATTTGAAGTGTTGCAAAAAGCCGGTAAAGGTGCTCGACTCTCTGCCGACGACATTGTTTCCCGTCTTTCCAAAATTAAAAATCCTGAAGCTTCCAAAATGCTAGATCGCATTCTTGCTCTTCTTGCCTCTCACTCAGTGCTNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGCATGACTCTTGTTGCCAAATTTTTTGCTCCTAATTCCGATGGGGTTTCATTAGGACTCTTGACTGCCTTGACTAATGAAAAGATCATATTAGCTAGCTG 455 0.3648 MDNLSNSKNIVECESKSIENREEQETLEDEEESFSYAMQLAISIALPMALQSAIELGVFEVLQKAGKGARLSADDIVSRLSKIKNPEASKMLDRILALLASHSVLXXXXXXXXXXXXXSMTLVAKFFAPNSDGVSLGLLTALTNEKIILAS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34118g00001 151 Gene3D - 7 126 IPR036388 -
Trme34118g00001 151 Pfam Dimerisation domain 48 100 IPR012967 GO:0046983
Trme34118g00001 151 Coils Coil 13 33 - -
Trme34118g00001 151 SUPERFAMILY "Winged helix" DNA-binding domain 29 129 IPR036390 -
Trme34118g00001 151 FunFam Caffeic acid 3-O-methyltransferase 15 127 - -
Trme34118g00001 151 PANTHER O-METHYLTRANSFERASE 37 131 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34118g00001 Trme-Chr34118 460 914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34118g00001 30 151 Monolignol Biosynthesis Gene Families AT5G54160 39.200 5.64e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34118g00001 K13066 - qsu:112008542 117.087