Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme341108g00001 ATGTATTTTATGGGACCATCAAAGACTTTTGTTGCGTGCAAGCTTTTGATCATGGAAGGCCACAAGGCTTCTGTGAAGTTTGGCTCTGGGTGGAAGAAGTTTTGTGCTGCTAGTGGCTACAAAGCTGGTGATGTGCTGATCTTTGAATTCAAAGATGCAAAGGGATCTACAATTATCTTTGTGACCAAGTATTTTAATTAG 201 0.403 MYFMGPSKTFVACKLLIMEGHKASVKFGSGWKKFCAASGYKAGDVLIFEFKDAKGSTIIFVTKYFN 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme341108g00001 66 Pfam B3 DNA binding domain 18 56 IPR003340 GO:0003677
Trme341108g00001 66 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Trme341108g00001 66 SUPERFAMILY DNA-binding pseudobarrel domain 4 56 IPR015300 -
Trme341108g00001 66 Gene3D - 1 65 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme341108g00001 Trme-Chr341108 125 325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme341108g00001 25 60 REM Transcription Factor Family AT2G24680 44.444 8.40e-06 39.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme341108g00001 B3 2.1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme341108g00001 - - vun:114170161 48.9062