LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme34099g00001	ATGGCATTTCAAGATTTCGACCTCATCACAGAACGACGAAAAAGTGAGAAGAGACAACAACTGAAGAAAAGAATCCTCATCGGTGTTGTTTCTACCGTTGTTCTTGCGGGTCTGATAGGTTGTGCGTTCTTCGTTGCCACCTCAAAAGGCGCTTTTGGCGGTAGCAATACAAAGGAAGAATCTTCTCAAACTTCTAAGGGTAACAAACAACAACATATTGCACATTCAGAAAGGATAGTGAAATTGGTATGCACTTCTGCAGATTACAAAGAAAAATGTGAAGGACCTCTTAACAAAGCAATAGAAGCTGATCCTAAACTTCAACACCCTAAAGATCTTCTCAAAGTATATATTAAAGTTGTCGAAGATGAGGTTAACAAAGCTTTCGACAAAACAAACACATTCAAATTTGAAACCGAAGAAGAGAAAGGTGCATTTGAGGATTGTAAAAAGCTATTTGGAGATGCTCAGGATGATTTACAAACCTCTATTGATCAACTTACTGCAATTGAATTCAAGAAACTTTCTTCAAAAGCACCTGACTTGAATAGTTGGTTGAGTGCTGTTATCTCTTTTCAACAGACTTGTATTGATGGTTTTCCTGAAGGGAAAACGAAGACTAATCTTCAGAAACTTTTTGAGGATTCTAAGGAATTTGTTAGCAATTCACTTGCTATGGTCACTCAGGTTTCTACATTCCTTTCTACGGTTCAGACCCTTGCACGCGGCCGTTTGTTGTTGTCCGATAACTCCCCTGTTGCTTCTTTGGATTCTGAAGGTATTCCTGCATGGATCCATGCCGAGGAAAGAAGGGTGTTGAAGGCTGCCGATATTAGACCTACACCTAATGTCACTGTTGCAAAAGATGGTAG	872	0.3956	MAFQDFDLITERRKSEKRQQLKKRILIGVVSTVVLAGLIGCAFFVATSKGAFGGSNTKEESSQTSKGNKQQHIAHSERIVKLVCTSADYKEKCEGPLNKAIEADPKLQHPKDLLKVYIKVVEDEVNKAFDKTNTFKFETEEEKGAFEDCKKLFGDAQDDLQTSIDQLTAIEFKKLSSKAPDLNSWLSAVISFQQTCIDGFPEGKTKTNLQKLFEDSKEFVSNSLAMVTQVSTFLSTVQTLARGRLLLSDNSPVASLDSEGIPAWIHAEERRVLKAADIRPTPNVTVAKDG	290

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme34099g00001	290	PANTHER	PECTINESTERASE	39	290	-	-
	Trme34099g00001	290	Pfam	Plant invertase/pectin methylesterase inhibitor	80	226	IPR006501	GO:0004857
	Trme34099g00001	290	NCBIfam	pectinesterase inhibitor domain	75	230	IPR006501	GO:0004857
	Trme34099g00001	290	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	79	230	IPR035513	-
	Trme34099g00001	290	Gene3D	Invertase/pectin methylesterase inhibitor family protein	76	231	IPR035513	-
	Trme34099g00001	290	FunFam	Pectinesterase	76	231	-	-
	Trme34099g00001	290	CDD	PMEI-like_3	82	232	-	-
	Trme34099g00001	290	SMART	PMEI_2	75	226	IPR006501	GO:0004857

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme34099g00001	Trme-Chr34099	1	872	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme34099g00001	1	290	Carbohydrate Esterase	AT4G33230	35.948	1.57e-49	171

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme34099g00001	-		-	gmx:100784679	357.836

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