Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme340325g00001 AGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATAATCTATGGAGGCCTTAAACCTGAGAATGTGTTGGTGAGAGAAGACGGTCATATAATGCTTTCAGATTTCAATCTCTCTCTAAGGTGCACCGTCAGTACAACTCTGGTGAAGTATTCAAACCGGATTGCCGAAACAAAAAGCTCAGGATACTGCATTCAGCCAACATGTGCAATGTAA 234 0.4274 RFYVAEVLLALEYLHMLGIIYGGLKPENVLVREDGHIMLSDFNLSLRCTVSTTLVKYSNRIAETKSSGYCIQPTCAM 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme340325g00001 77 Pfam Protein kinase domain 1 53 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme340325g00001 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme340325g00001 77 FunFam Serine/threonine-protein kinase OXI1 1 50 - -
Trme340325g00001 77 SUPERFAMILY Protein kinase-like (PK-like) 2 57 IPR011009 -
Trme340325g00001 77 Gene3D Transferase(Phosphotransferase) domain 1 1 51 - -
Trme340325g00001 77 PANTHER FLIPPASE KINASE 1-RELATED 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme340325g00001 Trme-Chr340325 1 234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme340325g00001 1 75 AGC Kinase Gene Family AT3G27580 80.000 4.05e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme340325g00001 Pkinase 4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme340325g00001 K08286 - gmx:100812077 129.798