Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34009g00001 ATGTTATCAAATCCATTTTATAATTCATCAAATAACAAAAAACGCGATCTATCATACGACGTCGTTCACATCCCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGATTCAGTTCGATTCACCGCCAAATCAACCGTCTCACAACAACAGCACAGCGAAGAAACTCTCAAATTGAATCTCGGCGGCGTCGTAAGCGGCGGAGTAAACAGCGGAGTAAACGGCGGAGTTGTAAACAGAGCAAACAAACGAGTACGATCAGGATCTCCAACGGCATCGTATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGACGGCATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAAGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTGTTGGAATTTGATGAAGGGAAACGGAGTTGTAGAAGGAGACTTGCTGGACATAATCGTCGCCGGAGAAAAACGCAGCCGGATGAGGTTGCCACTTCTTCTCCTCCGTTGAATCAGCAAGTTGTGGCGGCTGCGGCTAATTTGGAAATTTTTAATTTGTTGACTGCTATTGCTGATGGTTCTCAAGGTATGGGTTAA 636 0.4308 MLSNPFYNSSNNKKRDLSYDVVHIPNDNWNPKEWNWDSVRFTAKSTVSQQQHSEETLKLNLGGVVSGGVNSGVNGGVVNRANKRVRSGSPTASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVATSSPPLNQQVVAAAANLEIFNLLTAIADGSQGMG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34009g00001 211 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Trme34009g00001 211 MobiDBLite consensus disorder prediction 162 182 - -
Trme34009g00001 211 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Trme34009g00001 211 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 179 IPR044817 GO:0003677
Trme34009g00001 211 Pfam SBP domain 97 170 IPR004333 GO:0003677
Trme34009g00001 211 Gene3D - 88 158 IPR036893 GO:0003677|GO:0005634
Trme34009g00001 211 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34009g00001 Trme-Chr34009 437 1072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34009g00001 6 204 SBP-box Gene Family AT1G20980 55.909 2.25e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme34009g00001 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34009g00001 - - gmx:100819004 243.047