Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33945g00001 ATGATGATGCAACCAAATATGCAGTATGCATGCCGAAAAACTTTGGCTGATAGCCGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGAGATGCACAAAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAG 150 0.4067 MMMQPNMQYACRKTLADSRPRVRGRFAKNDDFGDAQRTASGNHEEEDEEE 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33945g00001 50 MobiDBLite consensus disorder prediction 16 43 - -
Trme33945g00001 50 MobiDBLite consensus disorder prediction 15 50 - -
Trme33945g00001 50 Pfam CCT motif 4 29 IPR010402 GO:0005515
Trme33945g00001 50 ProSiteProfiles CCT domain profile. 1 29 IPR010402 GO:0005515
Trme33945g00001 50 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 7 41 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33945g00001 Trme-Chr33945 337 486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33945g00001 3 45 C2C2-CO-like Transcription Factor Family AT5G57660 41.667 4.29e-06 39.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme33945g00001 CCT 1.8e-11 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33945g00001 - - aprc:113871720 83.1889