Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme338g00001 ATGCGTGCTCTTGGTATCAATTCCCGTTTGGACCAAATTTTTAATGCTCCTGTTGCTGTCAAGGACGTGTTGATTAGCGAATTCAAACTTGATCGTTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTGACGGGGTCCCAAAATTAGGAATTACTAGTTTATGGACACCAGAAAACCACTATCACTGGTCTAAGTCTAGATATGGAAATCATGTCTCGGCCGTTGTTGGACAAGTTGAACACCCAAAACTTCTACTGAATAATTTAAATGTGAGGGACATTGAGGATCTGAGGTCCGAGGAAAGGGAGCATCAAGAACTCATTACTTCCATGGAGGAAAGTATCAAAAGTTTTCAAGACGAAGAAAAACGCTTACGGAATCAGGCTGCTAATCTTCGTAAACAGAAGGAGGACATTRGTAATACACTACAGAATGAGAAAAACAAACGACAAGCAATAATTCAGTATATTGAACAAAAGAAAGCGATACTGAAGTCGATGGAGGAGCAGGATGATTTAGATACCCAGTTAGTGAAGCTTGTTGATCAGGCAACAGAATGTAACATTCAGCGATTTCATAATGCAATTAAAATTAAGGATAATCTTGTTGAATCTGTGGGTTACAGTCAAAGTTTTGTTGAACAACGAATGGCTTTCGTTGAATTTGATGCGAAGATTGGAGAGATGGAGGCCAATCTGAAGCATCATGAAAATTTTGCTCAGCAAGCATCTTTGCACTTTAACAACTCTAAGAAAGAGGCCGATGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAANTCAATTGTCCAACTTACACCTAACGTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGAAGCTATTCAAGATACAACTTCTCAAGCTAATTCAATCCTTTTTGTCAATAATAACATTTTGAAAGAATATGAGGATCGTCAAAGACAGATAGAAGATCTTTCTACAAAACTTGATGCAGACAAGAAGGAATCTAGAAGGTGTCTAGCTGAGTTGGATAACATTAAGGGAAAATGGCTTCCAACACTCAGAAACCTTGTCGCCCAGATAAATGAAATTTTTAGTCAAAATTTTCAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAACATGATATGGACTTTGATAAATTTGGAATACTTATAAAAGTCAAATTCAG 1205 0.3734 MRALGINSRLDQIFNAPVAVKDVLISEFKLDRSFIGSKETDQKADGVPKLGITSLWTPENHYHWSKSRYGNHVSAVVGQVEHPKLLLNNLNVRDIEDLRSEEREHQELITSMEESIKSFQDEEKRLRNQAANLRKQKEDIXNTLQNEKNKRQAIIQYIEQKKAILKSMEEQDDLDTQLVKLVDQATECNIQRFHNAIKIKDNLVESVGYSQSFVEQRMAFVEFDAKIGEMEANLKHHENFAQQASLHFNNSKKEADECRQKLTDLLNYAXSIVQLTPNVEKEFLEMPTTIEELEEAIQDTTSQANSILFVNNNILKEYEDRQRQIEDLSTKLDADKKESRRCLAELDNIKGKWLPTLRNLVAQINEIFSQNFQQMAVAGEVSLDEHDMDFDKFGILIKVKF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme338g00001 401 Coils Coil 95 140 - -
Trme338g00001 401 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 401 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Trme338g00001 401 Coils Coil 311 338 - -
Trme338g00001 401 Coils Coil 142 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme338g00001 Trme-Chr338 172 4445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme338g00001 1 401 Structural Maintenance of Chromosomes family AT5G15920 53.367 8.21e-138 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme338g00001 K22803 - gmx:100778678 580.482