Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33877g00001 TTGTTGATAACCATGGTGGAAGAAGGTACAGTTGCTGCTGTTACAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAACTTGTTCCWATTGCTCTTACAAAAGCAAAAGAGGTAAAAGGGTTCCTTGTTAGATGGAAAATGATCATTTCAAAATTGGAACAAGTTCCATCAAAGCTATCCGATTTATCGAGCCACCCTTGTTTTTCAAAGAATGCTCTTTGCAAAGAACAATTGCAGGCTGTATCAAAGACACTAAGAGAATCCATTGAATTAGCTGAGTTATGTTTGAAGGAAAAGTATGAAGGTAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGAAAGCTTGATTTGAATTTAAAGGATTGTAGCTTGTTAACGAAAACCGGTGTACTTGGTGAAGCTACTTTGCAATTCAATGTTTCTGGTTTTTTAGCAGAATCAGATATTGAAACACATGGTAATATAAAGGAACTACTTGCGCGTCTTCAAATCGGTCATTTGGAAGCGAAACACAAAGCTTTGGATAGATTGCATGATATTATGAGAGAAGATGAGAAGAATGTTTTGGCTGTTTTTTGTAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTTACAGCAACATCAACAAGTATTAGGGAGAAAACAGTTAGTATTATATGTTCTCTTGTTGAATCGGGTGGTAGCTGCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCTCTTATAAGACTTGTTGAATCAGGTAGTACTTTTGGTAAAGAAAAGGCTATTGTTTCTCTTCAGAGGCTGTCGATGTCGGAGGAAACAACTCGTGCTATTGTTGGACACGGAGGGGTTCCTCCGTTAATCGA 872 0.3761 MLITMVEEGTVAAVTVDTCSTEEWLLNSQELVPIALTKAKEVKGFLVRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLRESIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEATLQFNVSGFLAESDIETHGNIKELLARLQIGHLEAKHKALDRLHDIMREDEKNVLAVFCRSNVAALVQLLTATSTSIREKTVSIICSLVESGGSCENWLVSEGVLPPLIRLVESGSTFGKEKAIVSLQRLSMSEETTRAIVGHGGVPPLI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33877g00001 290 Gene3D - 152 290 IPR011989 -
Trme33877g00001 290 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 20 290 - -
Trme33877g00001 290 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Trme33877g00001 290 SUPERFAMILY ARM repeat 158 290 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33877g00001 Trme-Chr33877 249 1120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33877g00001 152 290 U-box Gene Family AT5G42340 27.143 7.21e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33877g00001 - - gmx:100798922 444.891