Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3384g00001 GGAAAGAATAGTGCTGATAGATCTCTTCTTGTTGATCTTATGTATTGGGTTTCCCAAAATCCCCCGCCTGCACATCTCTTTCTGATATCTGGTGATAGAGACTTTGCTGGCATATTACACCGATTAAGGATGAACAACTACAATATCTTGCTTGCAATTCCAGGAAAGGCTCCTGATGTTCTTTGTAGTGCAGCAACCATAATGTGGCAGTGGACTTCATTGCTCAAGGGAGAAAATCTAACTGGGAAGCATTTCAACCACCCTCCTGATGGTCAGTTTGGTTCTTGGTATGGAAACTCTAAAGTGCCTCTTGAAAACCCCTTTTCAGCTGCCGAGCAGTCACCATCTTCACAAAAAGTACAAATTGTGGAAATCAATGAACCTTCCTCAGACTTACAGTCAGCTGGAGGAGAACCAAAGTCAGTTATGAGGATTATTAAGCATATATTGAATTTACATCCAAATGGTATCGCCATTTCAGATCTTCGTGCAGAGCTGACAAAATGTAATGTGTCATTGGGTAGAAACATATTTGGATATAAAAGGCTTTACCGCTTTCTATCATCAATACCAAATGTACATCTCCAGAATGTAGGAAATGGTAATGGTAATTTTTGTGTGAAGTTGCTCCCCTCAGAGTCCCCCGAACCCTCTGAAAGCAGCACTACTCTATCAACGGCATCTGCTGTTAAGAATGAGGAGAGGGGCTACACAACTCCAAAGCTACACAGCAAAGATAAAGACATGGATAAAGACGTATATAGGAGTCCTTCATTATATTCATTGCAGGAAAAGATCATTGAAGATGATTCAAAATCATTCCAATCTATCCCTTCACAAGAAAGACATATCGAGGAAGATGTGCCACATGAATCATCTATACACAGTGAGAAGGTTGTGGATGTGTCTAATGCACAACTGTCGGAAAGTCAACTTTCACCAAAGGACGATGATGTTTCCAAAACTGAGATTGGTTCCTTTAAAGTAAGATCTAAAAAGTTGTTTGATGATGACATTGTTAGGTCTGAAGATGCAAGTCCAAAAGTTCTTGAAGAATATACCACTTCAGGGAATCCCGCTGCTGGTATTGATCACACAATGGTGGAAAACAATGATATAGCAAGTTATGATTCTGGAAAATCTATAGGAAAGAACAAACATGTGAATCAACCTAGAAAGGAGGTTGATGATCAAAGCCCATATACTTCAGCAGCTGATGACTCTCTAGTTGAGAAAAGACCTGATGGTTGTGTTGAAACTTACAGCAAAAGATCAACTTTCTTTAGCTGGATTAGAAGTTGGTGGCCATTTGGGAAAAGCAATGCAAAGGCTGATGATTTGAATGCTCATCAGAATAAGGTGACTAGTAGTTTTGAGGATTCAAAGTCATCTGAACTGAATCAGACTGCTAGTAATCTTGAAGAGTCCAAACCATTAGAACCACACCAGGAAGATGTCAGTCTTTCTGGAAAGGCTGAGGACTCCAAGTTATCTGAACTAGACCAGACTGCTAATAATCTTGAAGAGCCCAAGCGATTTGAACCACATCAGGATGTCAATCAATCAGGAAAGCCTGCGTTATTTTCTAGTGGTTCCTTTTGGAATGACATGGAATCTTTTGTTTTCAGCCCCAAAGGATCACTTCTTATTTCCCAATCTAGAAGCAGGTTTGTATGA 1677 0.4001 GKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGILHRLRMNNYNILLAIPGKAPDVLCSAATIMWQWTSLLKGENLTGKHFNHPPDGQFGSWYGNSKVPLENPFSAAEQSPSSQKVQIVEINEPSSDLQSAGGEPKSVMRIIKHILNLHPNGIAISDLRAELTKCNVSLGRNIFGYKRLYRFLSSIPNVHLQNVGNGNGNFCVKLLPSESPEPSESSTTLSTASAVKNEERGYTTPKLHSKDKDMDKDVYRSPSLYSLQEKIIEDDSKSFQSIPSQERHIEEDVPHESSIHSEKVVDVSNAQLSESQLSPKDDDVSKTEIGSFKVRSKKLFDDDIVRSEDASPKVLEEYTTSGNPAAGIDHTMVENNDIASYDSGKSIGKNKHVNQPRKEVDDQSPYTSAADDSLVEKRPDGCVETYSKRSTFFSWIRSWWPFGKSNAKADDLNAHQNKVTSSFEDSKSSELNQTASNLEESKPLEPHQEDVSLSGKAEDSKLSELDQTANNLEEPKRFEPHQDVNQSGKPALFSSGSFWNDMESFVFSPKGSLLISQSRSRFV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3384g00001 558 MobiDBLite consensus disorder prediction 455 476 - -
Trme3384g00001 558 CDD PIN_limkain_b1_N_like 1 54 - -
Trme3384g00001 558 MobiDBLite consensus disorder prediction 271 295 - -
Trme3384g00001 558 ProSiteProfiles OST-type HTH domain profile. 138 211 IPR025605 -
Trme3384g00001 558 MobiDBLite consensus disorder prediction 214 233 - -
Trme3384g00001 558 Pfam NYN domain 1 65 IPR021139 GO:0004540
Trme3384g00001 558 Gene3D - 135 215 IPR041966 -
Trme3384g00001 558 MobiDBLite consensus disorder prediction 455 524 - -
Trme3384g00001 558 MobiDBLite consensus disorder prediction 477 498 - -
Trme3384g00001 558 MobiDBLite consensus disorder prediction 236 250 - -
Trme3384g00001 558 MobiDBLite consensus disorder prediction 374 408 - -
Trme3384g00001 558 PANTHER LIMKAIN B LKAP 2 489 IPR024768 GO:0005777|GO:0010468
Trme3384g00001 558 MobiDBLite consensus disorder prediction 210 250 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3384g00001 2 77 C2H2 Transcription Factor Family AT5G61190 52.632 9.24e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3384g00001 - - tpra:123916554 1018.84