Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3382g00001 ATGTGTGATCCGTGTGCAAGTGTACTTTCCTGTGCTCGTGAATGCTTGCTTCCATTAGCCCGTGATCATTTGCTTCCATTTGCTCGTAAACATTTGTTTCCACTAGCCCTTGATCATTTGCTTCCAATACTAAAGGAATCTATCAACATGATTAGGGGTATCCCAAATGACGAAATTGCAGCAATGAAAAAGGAACTTGAAAGCATTGAAAAGTACATCCATCAAGCTGATAAAATGGCTGATGCTGAAGAAGCCAACCCAAGTGATGGAACCAGAGAAAAGATGAAGCAGCTGCTAGAAGCATCTTTTCGCATACAAGATCTCATTGATGAATACATCGTCCGTGAGGAGCAACAACTTCCAGATCCTGGATGTGTTGATGGTGCGTCTGACTATGTCAAAACTAAGTTTCTCCGTCTTCAAATAGCCCATGATATTCAGATCATCAAATCCCAGATTAATGAAATGAAAGATACAAGTACTGAAACGGATCATGAAGGATCAAGCAGTTCTATTACAAACCCAAATGCCACATTATTGCAGAACCTTCGAAAGGCTCCTTTTCACATGAAAGAAGCTGATGTTGTCGGCTTTGACAAGCCAAGAGACAAATTGGTTGATTGGCTGGTAAAGGGAAGAGATGAGCTCACAGTTGTATCTGTGGTAGCAATGGGAGGGCAAGGAAAAACCACTCTTGCTAGAAAAGTTTTTGACAGCAAAGAGGTCAASGKACRCTTTGRWTATCGTRTATGGATCACAGTKTCACAAYCATACAATATMGAAGAKTTGCTGAGAGAGCTGTTGAAGGAGCTTTRCAAACAACAAAATGWCARTCCTCCTCAAATAATTCATGAAATGAATAAAGAGTCATTAGTGGAAAAAGTGAGCAACTACTTGCAGGAGAAAAGGTACGTTGTAGTTTTTGATGATGTATGGAACTCATCTTTCTGGGCTGATATTAAATTTGCTATGAGTGATAAACAAAAAGGTTGTAGGATATTAATCACCTCTTGGATCATGGATGTTGCCACTTCTTGTAGGGAATCTTCTTTTGTTAAAATTCATGAATTGGAAGGTTTAGATGATAAGCAATCTTTAACATTGTTCAATAAGAAGGCATTTTTTGACTTGAATGGATGTTGTCCGGAAAATCTTGTTGATATATCTTCTGAAATTGTTAAAAAATGCGATGGATTACCACTAGCAATTGTGGTCATTGGAGGTCTTTTATCTTGCAAAGATAAAAATCCATTTCAATGGTCTAAGTTTAGTGAAAATCTTAATTCAGAGTTAAAGAAAGTTTCGGTGGTAAACAAAATTTTAGTTCTTAGTTACCATGATTTGCCTTACAATCTAAAGTCATGTCTGTTATATTTTGGAATATATCCTGAGGACTACATAGTTAATTCCAAGAGACTAATTCGGCAATGGATAGCTGAAGGGTTCGTAAAAGAGGAAATGGGAATGACTTTGGAAGAGGTTGCAGAAGGATATTTAACAGACTTGATCCATAGAAGTTTGGTGCAAGTAGTTTCAATCCACATTGATGGAAGAGCAAAAGATTGTCGTGTTCATGATCTAGTCCATGCAATGATCCTTAAAAATTTTGAGGATTTACGATTTTGCAAGAATATTAGTGAACATGGCCAATCAACTTTAACTGGAATAGTTCGACGCCTATCAAAAGCAACCGATTCTGATAATTTAATGGAAAGTATTGAAAGTTCACATGTTCAATCGCTGCTTGTTCTCAAACCTTTCACATTACATGAAACCTTTGTAAGCAGAATTCCTACAAAATACAAAATGTTGAAAGTGCTTGCTTTTGAGCCTGCCGGACGGCATGAAGTTCCTGAAGATTTGGGAAGTTTGATCCACTTGAAGTATTTTAGCTTCACGATAGGAAATTTGCAAGCTTAG 1920 0.3714 MCDPCASVLSCARECLLPLARDHLLPFARKHLFPLALDHLLPILKESINMIRGIPNDEIAAMKKELESIEKYIHQADKMADAEEANPSDGTREKMKQLLEASFRIQDLIDEYIVREEQQLPDPGCVDGASDYVKTKFLRLQIAHDIQIIKSQINEMKDTSTETDHEGSSSSITNPNATLLQNLRKAPFHMKEADVVGFDKPRDKLVDWLVKGRDELTVVSVVAMGGQGKTTLARKVFDSKEVXXXFXYRXWITVSQXYNIEXLLRELLKELXKQQNXXPPQIIHEMNKESLVEKVSNYLQEKRYVVVFDDVWNSSFWADIKFAMSDKQKGCRILITSWIMDVATSCRESSFVKIHELEGLDDKQSLTLFNKKAFFDLNGCCPENLVDISSEIVKKCDGLPLAIVVIGGLLSCKDKNPFQWSKFSENLNSELKKVSVVNKILVLSYHDLPYNLKSCLLYFGIYPEDYIVNSKRLIRQWIAEGFVKEEMGMTLEEVAEGYLTDLIHRSLVQVVSIHIDGRAKDCRVHDLVHAMILKNFEDLRFCKNISEHGQSTLTGIVRRLSKATDSDNLMESIESSHVQSLLVLKPFTLHETFVSRIPTKYKMLKVLAFEPAGRHEVPEDLGSLIHLKYFSFTIGNLQA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3382g00001 639 Coils Coil 258 261 - -
Trme3382g00001 639 Gene3D - 445 535 IPR036388 -
Trme3382g00001 639 Gene3D - 359 444 IPR042197 -
Trme3382g00001 639 Coils Coil 263 271 - -
Trme3382g00001 639 FunFam Probable disease resistance protein At1g61300 180 350 - -
Trme3382g00001 639 FunFam Probable disease resistance protein At1g63360 445 534 - -
Trme3382g00001 639 PRINTS Disease resistance protein signature 396 410 - -
Trme3382g00001 639 PRINTS Disease resistance protein signature 298 312 - -
Trme3382g00001 639 PRINTS Disease resistance protein signature 218 233 - -
Trme3382g00001 639 Pfam Rx N-terminal domain 36 119 IPR041118 -
Trme3382g00001 639 Gene3D - 176 354 IPR027417 -
Trme3382g00001 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 459 IPR027417 -
Trme3382g00001 639 Pfam NB-ARC domain 201 436 IPR002182 GO:0043531
Trme3382g00001 639 CDD RX-CC_like 35 158 IPR038005 -
Trme3382g00001 639 Gene3D - 35 147 - -
Trme3382g00001 639 PANTHER DISEASE RESISTANCE PROTEIN RP 61 634 IPR044974 GO:0006952
Trme3382g00001 639 Coils Coil 273 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3382g00001 Trme-Chr3382 114 2131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3382g00001 215 417 WRKY Transcription Factor Family AT5G45050 29.612 7.12e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3382g00001 K13457 - mtr:25489074 597.045