Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33745g00001 AGCAACCAAAAAAACATGGTCACAGCCCAAGGTCGAGAAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTAACATAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCACCATCAAAACATACCTCGGCCGCCCATGGAAGAAATACTCCAGGACAGTTGTGCTGCAATCCGTCGTGGACGGCCACATTGACCCGGCAGGATGGGCTGAATGGGATGCCGCAAGCAAGGACTTTCTCCAAACATTGTATTACGGAGAGTACTTGAACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTAACTTGGCCTGGTTTTCATATCATCAAAAGTGCTGCAGAGGCTAGCAAGTTTACAGTAGCACAACTCATCCAAGGAAATGTTTGGTTGAAGAATACTGGAGTGGCCTTCATCGAAGGTCTGTAG 432 0.4838 SNQKNMVTAQGREDPNQNTATSIQQCNIIPSSDLKPVQGTIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYLNSGAGAGTSKRVTWPGFHIIKSAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33745g00001 143 Gene3D - 1 143 IPR012334 -
Trme33745g00001 143 MobiDBLite consensus disorder prediction 1 21 - -
Trme33745g00001 143 SUPERFAMILY Pectin lyase-like 2 142 IPR011050 -
Trme33745g00001 143 PANTHER PECTINESTERASE 2 133 - -
Trme33745g00001 143 Pfam Pectinesterase 2 129 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33745g00001 Trme-Chr33745 690 1121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33745g00001 3 143 Carbohydrate Esterase AT1G11580 66.901 1.27e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33745g00001 K01051 - gmx:100815836 260.381