Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme337384g00001 AGAGTGAGAGTGAGGGCGGGCAGTGGTGAAGAGGAAGTAACAGTACAGTCAAAAGTGACTCACAAAGTATACTTTGATATAAGTATTGGAAATCCAGTTGGAAAGCTGGTGGGAAGGATTGTGATTGGACTCTTTGGTGACGATGTACCCCAAACTGCTGAGAACTTCCGTGCCCTTTGCACCGGTGAGAAGGGTTTTGGCTACAAGTCCTCCGCCTTCCATCGTGTCATCAAGGATTTTATGATTCAAGGAGGCGATTTTGACAAAGGAAATGGGACCGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAAAC 328 0.4451 RVRVRAGSGEEEVTVQSKVTHKVYFDISIGNPVGKLVGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKSSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFK 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme337384g00001 109 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 IPR002130 GO:0000413|GO:0003755
Trme337384g00001 109 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Trme337384g00001 109 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 68 85 IPR020892 GO:0003755|GO:0006457
Trme337384g00001 109 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 37 107 IPR002130 GO:0000413|GO:0003755
Trme337384g00001 109 Gene3D - 7 109 IPR029000 -
Trme337384g00001 109 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 34 109 IPR002130 GO:0000413|GO:0003755
Trme337384g00001 109 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 22 109 - -
Trme337384g00001 109 SUPERFAMILY Cyclophilin-like 18 108 IPR029000 -
Trme337384g00001 109 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme337384g00001 Trme-Chr337384 2 329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme337384g00001 38 106 U-box Gene Family AT5G67530 52.174 1.26e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme337384g00001 K03768 - sind:105168448 194.126