Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33681g00001 ATGTCAAAAATTCTGACTAAGAAATCAAGTGAACTTTTGCTGAACAGAAGTCCCTACTGGATGGCTCCAGAGCTCATGATGGTTTCCATGAAGAAAGCAACCAATCCCAACATTGCCATGGCTGTCGATATATGGAGCTTAGGATGCACCGTCATCGAAATGTTGACAGGAAAACCCCCTTGGAGCGAGTTTTCAGGGCATCAAGCCATGTTCAAGGCACTGCACAGATCCCCGGACATACCCAAAACTTTATCTCCAGAAGGACATGATTTCCTTGAGCAGTGTTTCCGAAGGAATCCTGTAGAACGACCATCTGCAGCGGAGCTTCTAACACATGCATTTGTAGAAAAGAAGACACTGGACCCAAA 368 0.4565 MSKILTKKSSELLLNRSPYWMAPELMMVSMKKATNPNIAMAVDIWSLGCTVIEMLTGKPPWSEFSGHQAMFKALHRSPDIPKTLSPEGHDFLEQCFRRNPVERPSAAELLTHAFVEKKTLDP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33681g00001 122 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33681g00001 122 Gene3D Transferase(Phosphotransferase) domain 1 2 121 - -
Trme33681g00001 122 SMART serkin_6 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33681g00001 122 Pfam Protein kinase domain 14 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33681g00001 122 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 2 118 - -
Trme33681g00001 122 SUPERFAMILY Protein kinase-like (PK-like) 16 117 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33681g00001 Trme-Chr33681 149 1064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33681g00001 1 122 MAP Kinase Kinase Kinase AT5G66850 61.475 3.12e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme33681g00001 Pkinase 1.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33681g00001 - - tpra:123916587 247.284