Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33667g00001 ATGGATTTGTCGGGGCAGGTCAAGCAATTTTCTTGGCTCGAAAGTACTCAGAGCTGGAACTTGTTTTGGTCAAGGCCAATAGGACAGTGTGAGGTTTATGCTTTCTGTGGTGCATTTGGTAGCTGTAATGAGAACTCAAAGCCAGCTTGYAATTGTTTGAATGGTTATGAACCAAAGTTGAAATCTGATTGGGATCTTGGTGATTAYTCACATGGTTGTGTGAAAAGAAACAAGTTTCAATGTGAGGTATCTTCCAATCCTTCTAGTGGTGCCAAGGATAGGTTCTTATCCATATCCAGTCTGGCTTTGCCTGAAGATGCAAAACATGTTGTGGAAGCTGGTTTAGTTGATGAATGTGAGTCAACCTGTTTGAGCAACTGTTCTTGCACTGCATATGCTTATAACAGTAGCGGTTGTTTCATTTGGAAGGGAGAGCTCTTGAATCTGAAACAGATTTCTCAAGATGATAGTAATGGACAGACTTTGTTTCTAAAACTTGCTGCATCTGAGTTTTCTGATTCTAAAAGCAACAAAGGGATAACAACCATTGGTATTGTTTCTGGTGCTGTTGGCGGTAGTATAGTGGTTCTCCTTGTTTTTGTTCTAATTGTCGTGATTAGGCGAAGAAAGAGACTAGCTGGAGCAAGAACTTCTGTTGGGGGCTCATTGATAGCATTTGCATACAGAGATTTGCAAAATGCTACCAAGAATTTCTCAGACAAACTTGGAGGAGGAGGTTTTGGTTCTGTTTTCAAAGGAACATTACCCGATTCAAGTGGCGTAGCAGTAAAGAAACTCGAAAGCATTAGCCAAGGCGAGAAGCAGTTTCGAACAGAAGTGAGTACTATCGGCACAGTCCAACATGTCAACCTTGTTAGGCTTCGTGGTTTCTGTTCCGAAGGCGACAAAAAGCTTCTGGTTTATGATTACATGCCAAATGGGTCTTTGGATTCAA 955 0.4136 MDLSGQVKQFSWLESTQSWNLFWSRPIGQCEVYAFCGAFGSCNENSKPACNCLNGYEPKLKSDWDLGDYSHGCVKRNKFQCEVSSNPSSGAKDRFLSISSLALPEDAKHVVEAGLVDECESTCLSNCSCTAYAYNSSGCFIWKGELLNLKQISQDDSNGQTLFLKLAASEFSDSKSNKGITTIGIVSGAVGGSIVVLLVFVLIVVIRRRKRLAGARTSVGGSLIAFAYRDLQNATKNFSDKLGGGGFGSVFKGTLPDSSGVAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGDKKLLVYDYMPNGSLDS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33667g00001 318 ProSiteProfiles PAN/Apple domain profile. 81 167 IPR003609 -
Trme33667g00001 318 PANTHER OS07G0415500 PROTEIN 1 318 - -
Trme33667g00001 318 ProSitePatterns Protein kinases ATP-binding region signature. 242 265 IPR017441 GO:0005524
Trme33667g00001 318 Pfam Protein tyrosine and serine/threonine kinase 238 317 IPR001245 GO:0004672|GO:0006468
Trme33667g00001 318 SMART ntp_6 90 166 IPR003609 -
Trme33667g00001 318 CDD PAN_AP_plant 88 167 - -
Trme33667g00001 318 Pfam PAN-like domain 91 148 IPR003609 -
Trme33667g00001 318 SUPERFAMILY Protein kinase-like (PK-like) 221 317 IPR011009 -
Trme33667g00001 318 ProSiteProfiles Protein kinase domain profile. 236 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33667g00001 318 FunFam Serine/threonine-protein kinase 203 310 - -
Trme33667g00001 318 Pfam S-locus glycoprotein domain 1 59 IPR000858 GO:0048544
Trme33667g00001 318 Gene3D Phosphorylase Kinase; domain 1 203 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33667g00001 Trme-Chr33667 20 974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33667g00001 193 316 Receptor kinase-like Gene Family AT5G45780 45.455 1.24e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme33667g00001 PK_Tyr_Ser-Thr 3.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33667g00001 - - gmx:100305421 451.44