Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33654g00001 ATGGAAAACGGGTCTTCCCTTGATCTCCTTGAAGCTAAAACTTTTACCGAATCTCACGGAAACGGCGATTGTCTTATTGAGGATCGTGTTGATCATGACAGTGCTAAACAAAAATCTTTGTTTTCTCAACAATTTTCGGTTTATCTTGAGGAGAATTGTAGTAGAGGCAATGTGAGGCCTGTGCCTGTGATACTTGGTGACGGTCAATTGCTTGATTTATACCAACTTTTCTCCCTTGTGAAGGAAAAAGGTGGGTATGATGCGGTATCAAGAAAAGGGTTGTGGTATTCTGTGATAATTGAACTGGGTTTGGACCTTCATGTTTTGGCTTCAGTGAAATTAATTTATGACAAATATCTGCGTGATTTCGAAGGTTGGCTCAGCAAAACCAAAAGAGTGACGGTTAACCAAACGAGTGATGGTTCTTTATTGGGCACCGAAAACCTAAACAACAAATTACCGAATTTTCACATGAATGCGGAACCATTACCAAATTTTCTGGCGGTGAGAAAGAATGCTGAACCAAACAGTGGATCATCTTCTCAGGTATACTTTCAATGCACATGA 567 0.4004 MENGSSLDLLEAKTFTESHGNGDCLIEDRVDHDSAKQKSLFSQQFSVYLEENCSRGNVRPVPVILGDGQLLDLYQLFSLVKEKGGYDAVSRKGLWYSVIIELGLDLHVLASVKLIYDKYLRDFEGWLSKTKRVTVNQTSDGSLLGTENLNNKLPNFHMNAEPLPNFLAVRKNAEPNSGSSSQVYFQCT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33654g00001 188 SUPERFAMILY ARID-like 33 136 IPR036431 GO:0003677
Trme33654g00001 188 ProSiteProfiles ARID domain profile. 35 128 IPR001606 GO:0003677
Trme33654g00001 188 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 31 134 - -
Trme33654g00001 188 SMART bright_3 36 129 IPR001606 GO:0003677
Trme33654g00001 188 Gene3D - 23 140 IPR036431 GO:0003677
Trme33654g00001 188 Pfam ARID/BRIGHT DNA binding domain 43 124 IPR001606 GO:0003677
Trme33654g00001 188 SMART ARID_2 32 124 - -
Trme33654g00001 188 CDD ARID 41 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33654g00001 Trme-Chr33654 347 913 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trme33654g00001 ARID 3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33654g00001 - - psat:127100343 205.297