Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3353g00001 GAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTTCATTTGGAGCTGATCTCTATAAGCGGTTTCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGAAGTTGATAGCAGAGGGTCATCTTATTTGAAAGCGGAATTGTTGACAATAATTGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGAATAGTTAAATCTTCTCGTTTAGCTCCTCGGAAATGTCCCCAATACGTAGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCCGGCCATCATCTTTTGTGTGTCTGGAGGTAAATGAATGTGATTGA 462 0.4221 EPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGSFGADLYKRFHKTAVLSHEELLCVVAQYGEVDSRGSSYLKAELLTIIDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEVNECD 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3353g00001 153 Pfam JmjC domain, hydroxylase 1 29 IPR003347 -
Trme3353g00001 153 Gene3D Cupin 1 72 - -
Trme3353g00001 153 Pfam C5HC2 zinc finger 123 148 IPR004198 -
Trme3353g00001 153 SUPERFAMILY Clavaminate synthase-like 1 61 - -
Trme3353g00001 153 ProSiteProfiles JmjC domain profile. 1 46 IPR003347 -
Trme3353g00001 153 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 148 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3353g00001 3 147 JUMONJI Transcription Factor Family AT1G08620 38.182 5.89e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme3353g00001 zf-C5HC2 4.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3353g00001 K11446 - gmx:100819576 286.96