Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33498g00001 TCATATAACCAAGAAGAGTATGACATTTTCAAGAAGTTTGAGAATTTCTACGATTTCAAATGCTTGCGAAGCTTTCTACCCCTTGGTCTCTGGTGGCGACAATCTTACTTATCTAAACAAGTGGTTGATGATTTGATACCCACACTTAGAAGGTTGCGTGTGTTATCGTTATCAGGTTATAGAAACATCACCATTCTACCAGATTCAATTGGGAGTTTGGTGCAGTTGCGGTATCTTGATCTCTCCAACACTAGAATTGAAAGCTTGCCTGATACAACATGTAACCTTTGCAATTTGCNAACATTGATTTTATCATATTGCTTTCATCTCGTTGAATTGCCGGTACATATTGGAAAGTTAATAAATTTACGTCACTTAAACATTAATTGGACGAACATAAAGGAGATGCCAATGGAGATTCTTGGACTAGAAAACCTTCAGATTTTAACAACTTTTGTAGCAGGCAATAAAAAAGAGGGGTTAAGTGTGAGAGAGCTTGGTAAGTTTCCTAACCTACAGGGAAAACTTTGCATCCAGAAGCTGCATAATGTCATTGATGTCATGGAAGCATATGATGCCAACTTGAAGAGCAAAGAACATATCGAGGAATTAGTGCTATGTTGGGGCGAGCTAACCGAAGATTCACAAACTGCAAAAGCTGTGCTTGATGCATTGCAACCATCAACAAACTTGAAGAAACTGAGCATTGAGTTCTATGGCGGAACAAGTATTCCAAGTTGGTTGGGAGATTCTTCGTTTTCTAATATGGTGACCCTTTTCATCAGTAATTGTATATATTGCACGTCACTTCCACCACTAGGGCAGCTACCTTCTCTCAAGGACTTGACAATTAGAGGCATGCCATTGGAGACAATTGGCGCAGAGTTCTATGGCATGGTGGGAGGAGGTTCTAGTTCTTCATTCCAACCATTTCCATCCTTGGAGATCTTGAAATTTCAGAACATGTCAAATTGGAAGGAATGGCTTCCTTTTGTTGGCAACAAATTTTCTTTTCCTCGTCTTAAATGTCTAAGGTTATTCCAGTGTCCTAAACTGATGGGGTACTTGCCTAGCCATCTTTTTTCCATAGAACAAATTGGAATATATGGTTGTGATCTTCTCTTG 1125 0.392 SYNQEEYDIFKKFENFYDFKCLRSFLPLGLWWRQSYLSKQVVDDLIPTLRRLRVLSLSGYRNITILPDSIGSLVQLRYLDLSNTRIESLPDTTCNLCNLXTLILSYCFHLVELPVHIGKLINLRHLNINWTNIKEMPMEILGLENLQILTTFVAGNKKEGLSVRELGKFPNLQGKLCIQKLHNVIDVMEAYDANLKSKEHIEELVLCWGELTEDSQTAKAVLDALQPSTNLKKLSIEFYGGTSIPSWLGDSSFSNMVTLFISNCIYCTSLPPLGQLPSLKDLTIRGMPLETIGAEFYGMVGGGSSSSFQPFPSLEILKFQNMSNWKEWLPFVGNKFSFPRLKCLRLFQCPKLMGYLPSHLFSIEQIGIYGCDLLL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33498g00001 375 ProSiteProfiles Leucine-rich repeat profile. 75 96 IPR001611 GO:0005515
Trme33498g00001 375 Gene3D Ribonuclease Inhibitor 193 370 IPR032675 -
Trme33498g00001 375 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Trme33498g00001 375 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 13 373 - -
Trme33498g00001 375 SUPERFAMILY L domain-like 30 363 - -
Trme33498g00001 375 SMART LRR_typ_2 73 96 IPR003591 -
Trme33498g00001 375 SMART LRR_typ_2 120 143 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33498g00001 Trme-Chr33498 2 1126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33498g00001 63 149 WRKY Transcription Factor Family AT4G12020 39.773 5.39e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33498g00001 - - mtr:11408421 493.426