Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3348g00001 ATGAATCAAGTTGTGTTTAACTTCATTTTATTCACACTAAGCATTATTCTTTCATCAAAAGCCAAGGCACAACAGAATTACTCAGGAAATTCAATACTCAGCTGCAAGAACAACGATGATACGGGACCTTCACCGGCATTTCTTTACACCTGCAATGGCCTCAACAGATCATGCTTGGCCTTTCTCACCTTCAAATCCAATCCTCCTTATAACTCTGTTACCACAATTTCCAACCTCACATCATCGAACCCGAACGAGCTAGCCAGAATCAACCGCGCTACTTTGGTAACAGTTTTCCCACCTGGTAAAGAGGTTATTGTCCCTGTTAATTGTTCTTGTTTAACCAATGATTATTACCAAGCTGAAACCAAATATATATTGGGTCTAAACCCAACATATTTCATAGTAGCAAATGACACGTTCCAGGGTTTGTCGACATGTGATTCTCTTATGCGTGCGAATCCATACGGGGAACTTGATTTGTATGAAGGAATAGAGTTACATGTGCCACTCCGATGCGCTTGTCCAACGTATCATCAGAAAACAAATGGCACCAAGTATTTACTCACATATTCTGTGACCTGGGGTGATAACATTTCAAATATTGCTACAAGATTCAATGTAACAGTAGGTAATCTAATTGATGCCAATGGTTTTTCCACAGAAACACAACTCCTTTATCCATTCACAACTGTTCTGATTCCTTTGGCAAGTGAACCAGTGAATTTAACAACCATAGTTGCTAATGATCCTCCACCACCACCAACCCCACCACCACCAACCTCTCTTAGTTGCAGCTTCAAAAAGTGCAAATCAAACAGGAAAGTACTCCTCATTGCTTTAACCACCTCAGTGCTGGTTCTGTGTGTCTTCTTGGTTGTGCTGTTTATGTTTCTGTTTCTGCTCAGAAAGAGATCGGCAAGGTTCGTTAAGCGAGGAACACAATTTAACAATAAAAGAGAGCTGTTTTCTGAAGAGATCCGCGAGGAGATAGCGATCATTGAACATCTTTCCAAAGTGTATAGCTTTGAGGAAATAAAAGAGGCGACTGAGAATTTTAGTCCAAAGAACATGATCAAAGGTTCTTTATTCCGCGGTGTATTCGACGATGGCAAAGAAGTGTTGGCTGTTAAGAGAATGAGAAGAGATGCTTCCACAGAAATCAATTTGCTGAAAAGGATCAATCATTTCAACCTGATAAAACTGCAAGGTTACTGTGAAAACAATGATTGCATATATCTTGTTTATGAATACATAGAAAATGGATCTTTAAGAGAATGGCTTAGCAAGAATAGGTCCATTGAACACCAAAGTTGGGAAAAGAGGATACAGATTGCTTTGGATATTGCCAATGGACTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTACACAAGGACATAAGCAGTGGAAATGTTCTACTGAACAAAGATTTAAGGGCCAAGATAGCAAATTTTGCTCGTGCTGAAGAATCAAAAAGGATGATAACTTCTGGTTGTCCCACATCACATGTTGTAGGATCTGTCGGTTATTTGGCTCCCGAGTATCTCAAGGCAGGGGTAGTCAGCACCAAAATGGACATCTACGCCTTTGGAGTTGTGCTGTTGGAATTGATCACTGGCAAAGATTCTATTACCCTACAAGATGGAAGAGAAGTAATGCTTTATGAAATCATAGAAAATATCGTTGGCAAAGAGAACGAAGAGGAGAAGGTGAGTTTGTTCATTGATCCTTGCCTCACTGAAAACTGTAGGAAAGCATGTGCACTGCAGCT 1778 0.401 MNQVVFNFILFTLSIILSSKAKAQQNYSGNSILSCKNNDDTGPSPAFLYTCNGLNRSCLAFLTFKSNPPYNSVTTISNLTSSNPNELARINRATLVTVFPPGKEVIVPVNCSCLTNDYYQAETKYILGLNPTYFIVANDTFQGLSTCDSLMRANPYGELDLYEGIELHVPLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVTVGNLIDANGFSTETQLLYPFTTVLIPLASEPVNLTTIVANDPPPPPTPPPPTSLSCSFKKCKSNRKVLLIALTTSVLVLCVFLVVLFMFLFLLRKRSARFVKRGTQFNNKRELFSEEIREEIAIIEHLSKVYSFEEIKEATENFSPKNMIKGSLFRGVFDDGKEVLAVKRMRRDASTEINLLKRINHFNLIKLQGYCENNDCIYLVYEYIENGSLREWLSKNRSIEHQSWEKRIQIALDIANGLQYLHNFTEPCYVHKDISSGNVLLNKDLRAKIANFARAEESKRMITSGCPTSHVVGSVGYLAPEYLKAGVVSTKMDIYAFGVVLLELITGKDSITLQDGREVMLYEIIENIVGKENEEEKVSLFIDPCLTENCRKACALQL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3348g00001 593 Gene3D Transferase(Phosphotransferase) domain 1 419 593 - -
Trme3348g00001 593 Gene3D Phosphorylase Kinase; domain 1 311 418 - -
Trme3348g00001 593 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 585 - -
Trme3348g00001 593 ProSiteProfiles LysM domain profile. 189 234 IPR018392 -
Trme3348g00001 593 Gene3D LysM domain 177 245 IPR036779 -
Trme3348g00001 593 SMART LysM_2 190 235 IPR018392 -
Trme3348g00001 593 SUPERFAMILY LysM domain 189 235 IPR036779 -
Trme3348g00001 593 ProSiteProfiles Protein kinase domain profile. 353 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3348g00001 593 Pfam Protein kinase domain 378 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3348g00001 593 ProSitePatterns Tyrosine protein kinases specific active-site signature. 464 476 IPR008266 GO:0004672|GO:0006468
Trme3348g00001 593 Pfam LysM domain 191 235 IPR018392 -
Trme3348g00001 593 SUPERFAMILY Protein kinase-like (PK-like) 335 557 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3348g00001 Trme-Chr3348 1 1778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3348g00001 6 564 Receptor kinase-like Gene Family AT2G23770 40.767 5.49e-123 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme3348g00001 Pkinase 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3348g00001 - - gmx:100806221 807.364