Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme334502g00001 ATGGGATCAATGATCTCTACACCTCCAGCCAGTCCATTGCAGAGGGGGAACACATTTCCAGAGAGACCTGGTCAGCCCGAATGCCAATTCTACATGAAAACGGGAGATTGTAAGTTTGGTGCAGTCTGTCGATTCCACCACCCGCGTCAAAGACTAATTCCTGCTTCTCCTGACTGTCTCTTGAGTCCAATGGGCCTTCCTTTACGTCCT 210 0.5 MGSMISTPPASPLQRGNTFPERPGQPECQFYMKTGDCKFGAVCRFHHPRQRLIPASPDCLLSPMGLPLRP 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme334502g00001 70 Gene3D - 9 59 - -
Trme334502g00001 70 SMART c3hfinal6 22 49 IPR000571 GO:0046872
Trme334502g00001 70 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 24 49 IPR000571 GO:0046872
Trme334502g00001 70 PANTHER PROTEIN PHOSPHATASE RELATED 4 70 - -
Trme334502g00001 70 ProSiteProfiles Zinc finger C3H1-type profile. 22 50 IPR000571 GO:0046872
Trme334502g00001 70 MobiDBLite consensus disorder prediction 1 25 - -
Trme334502g00001 70 SUPERFAMILY CCCH zinc finger 26 51 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme334502g00001 Trme-Chr334502 66 275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme334502g00001 13 70 C2H2 Transcription Factor Family AT3G02830 79.310 1.55e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme334502g00001 zf-CCCH 6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme334502g00001 - - ccaj:109816515 118.627