Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme333g00001 ATGGAATTTCTTGTTACTGTATTGCAGGGAGAGTGCCAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTATTAACTTGAATGATGATATGGAACATGAGATGATGATGTTCCGAGTAATGTTCAACACAGCTTTTGTTAGATCCAATATTCTGATGCTTAATCGCGATGAAATTGATGTTCTATGGGATGCTAAAGATCACTTTCCAAAAGATTTCAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAATTATTGAAAATCGTACATCATGCTTTGAGGAGAAAGAGGGACTTCCGATTGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTGGACTGGATGAACCCAAAGGCTGATGCTGCACTAAATGTGCTCCAACATATAAATACTTCTGGTATCATGAATGACAAGCTGGATAAAGTTTCTGACCAGTATGTGGAAACTGGCACTTCATTGCATGAAATAGTTCCTAAAACGCCTCAGAGGAATTCATATGAAGTGATACAGTGTTTATCCTCAGCTAAGAGTTCCCCAAATAATGATATAAGTGGAAAAGAGGATAAGACAAACAAATTAGCCGCTATTCCACAGCAGGCTAATACATCCGACATCATCTGTCAGGAGACATTCTGCTCATCTGAAAGAACTATGGAATCCGGTAAATGTCCAACAGGGTCAACAAATCTGGACATAAAACCGGAGGCTTCCAAGCTTGCTTCATCTTGTTCTCCAGATTCTTCTCTTTCCCCTGGAACACCTCCTCCGCGGCCTCCCTCAACTACTAGTGCAAAAGAAGTTCATGACTCTCCTCTCCACACAGAATCACCTCCTCATCATATTTTTCCTTTGAAATCAGAACATCAACCACAAGACAGCAGTTATTCACCTATTTCTAGCCCTACACCTGGTACCCATCCTTCACTTTTAGCAGTTTCTTCAATTCAGCCATCCCCTCCACTTTCTTCCAAAACACCTTTGAATGACATTCCACCTGTCAAAACAAGACTCGAGTCTCCCCCTTCACAACCTCCAACTCCACCTCCTCCCACCCCTCCACTAAAAGATCAGAAAGCAGTTAGAGCTGGACCCTCATCCCCACCACCTCCTCCAAAGAAGGAACTACAAGCTGGACCTCCTCCTCCTCCTGTTCCATCTCATATGAACGAGAAGCCACATGTTAGAGATGGACATTCTCCTCCTCCTCCTCCTCTTCCTTCATCACCTCCTCTAAAAGTGGAGCAACCTTCTAGGTTTAAGCCCCCGCCGCCGCCACCACCGCCTCATCTTTCAATGGGAGCTGCAAGTCCTACTATAGCACCGCCGGCACCGCCTGCACCACCTCCACCTGCAACACTTTCCTCTGGTAACCCTAATGCTTCAATGCAAAAGTCTCCACCTGTTCCACCACCTCCAATTCCTTTAGGTAAAGAAGGACTAAAACCAGGCAGTGCTTTTCCAATGTCTCTTAAGGTCCCAGGCATAGCAGGACCACAATCTAAGGGACGGGGTCTACCAATTGGCTCAAAGAATAACTCCAAAAAGTTGAAGCCATTGCATTGGATGAAGCTATCTAGAGCAGTGCAAGGAAGTTTGTGGGACGAGACACAAAAATCTGGTGAAGCTTCCAAAGCCCCAGAGATTGATATCTCGGAGCTCGAGAATCTCTTCTCAGCAGCAGCCCCAAGTTCAGGCCTTGCCAAGAAGTCAAATGTCCAAAGCTCAGCTAAGCCTAAATCTGAGAAAGTGCAACTGATTGATCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTGAAGGTGCCATTGCATGATTTAATG 1863 0.4455 MEFLVTVLQGECQLIKIDINCHIQGDVVIEGINLNDDMEHEMMMFRVMFNTAFVRSNILMLNRDEIDVLWDAKDHFPKDFRAEILFSEMDAAAAIIENRTSCFEEKEGLPIEAFAKVQEIFSHVDWMNPKADAALNVLQHINTSGIMNDKLDKVSDQYVETGTSLHEIVPKTPQRNSYEVIQCLSSAKSSPNNDISGKEDKTNKLAAIPQQANTSDIICQETFCSSERTMESGKCPTGSTNLDIKPEASKLASSCSPDSSLSPGTPPPRPPSTTSAKEVHDSPLHTESPPHHIFPLKSEHQPQDSSYSPISSPTPGTHPSLLAVSSIQPSPPLSSKTPLNDIPPVKTRLESPPSQPPTPPPPTPPLKDQKAVRAGPSSPPPPPKKELQAGPPPPPVPSHMNEKPHVRDGHSPPPPPLPSSPPLKVEQPSRFKPPPPPPPPHLSMGAASPTIAPPAPPAPPPPATLSSGNPNASMQKSPPVPPPPIPLGKEGLKPGSAFPMSLKVPGIAGPQSKGRGLPIGSKNNSKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDISELENLFSAAAPSSGLAKKSNVQSSAKPKSEKVQLIDHRRAYNCEIMLSQVKVPLHDLM 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme333g00001 621 SMART PTEN_C2_2 1 88 IPR014020 -
Trme333g00001 621 MobiDBLite consensus disorder prediction 299 335 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 576 592 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 475 489 - -
Trme333g00001 621 ProSiteProfiles Formin homology-2 (FH2) domain profile. 518 621 IPR015425 -
Trme333g00001 621 ProSiteProfiles C2 tensin-type domain profile. 1 89 IPR014020 -
Trme333g00001 621 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 89 IPR035892 -
Trme333g00001 621 PANTHER FORMIN-J 9 398 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 229 260 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 280 298 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 229 531 - -
Trme333g00001 621 Gene3D Formin, FH2 domain 520 621 IPR042201 -
Trme333g00001 621 MobiDBLite consensus disorder prediction 375 400 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 574 595 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 410 466 - -
Trme333g00001 621 SUPERFAMILY Formin homology 2 domain (FH2 domain) 453 620 - -
Trme333g00001 621 Pfam Formin Homology 2 Domain 523 620 IPR015425 -
Trme333g00001 621 Gene3D - 5 92 - -
Trme333g00001 621 MobiDBLite consensus disorder prediction 349 367 - -
Trme333g00001 621 Pfam C2 domain of PTEN tumour-suppressor protein 11 88 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme333g00001 Trme-Chr333 338 3228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme333g00001 9 177 Protein tyrosine phosphatase (PTP) family AT5G58160 53.216 8.97e-54 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme333g00001 - - lja:Lj4g3v1983370.1 718.383