Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33394g00001 CAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCCGTGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGATAATAATGGAGTATTGAAAATTGCAGATTTTGGTTTGGCAAGCTTTTTTGATCCTAATCAAAATCAGCCACTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCACCTGAACTTTTACTTGGAGCTACTTACTATGGCACTGCTGTAGATTTATGGAGTACAGGGTGCATACTTGCTGAGCTGTATGCCGGCAAGCCTATTATGCCTGGTAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCGCCTTCAGAGGACTATTGGAGAAAATCAAAATTGCCTCATGCAACGATATTTAAGCCTCAACAACCTTATAGGCGTTGTGTTGCTGAAACATTCAAAGACTTTCCTGCACCTGCAATTGAACTGATAGAAACACTTTTGTCCATAGACCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGATAAGTGAGGTTCCTCTGGAAGTGCACCTCTAG 573 0.4206 QVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGTSASALISEVPLEVHL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33394g00001 190 SUPERFAMILY Protein kinase-like (PK-like) 1 180 IPR011009 -
Trme33394g00001 190 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33394g00001 190 Gene3D Transferase(Phosphotransferase) domain 1 1 188 - -
Trme33394g00001 190 Pfam Protein kinase domain 2 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33394g00001 190 SMART serkin_6 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33394g00001 190 FunFam Mitogen-activated protein kinase 1 187 - -
Trme33394g00001 190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
Trme33394g00001 190 PANTHER CELL DIVISION PROTEIN KINASE 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33394g00001 Trme-Chr33394 91 1127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33394g00001 1 183 Core Cell Cycle Gene Families AT5G10270 59.239 7.27e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme33394g00001 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33394g00001 - - gmx:100792173 368.237