Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33386g00001 GGCAGTGGTGGTAGAGGTGGAAGTCAAGGTTTTAGAGGCTCTGGTAGAGGAGGTAGTGGAGGGAGAGGTGGTGGGTTTGGAGGTAGACATGGATCTTCTAAGGATGACTTGAATAACATTAATCTTCCAAAGCAAGATTTTAGGAATTTGGTACCTTTTCAGAAGAATTTCTATATTGAAAGTCCTCAGATACAAGCTATGTCTGATATTCAAGTTATGCAGTACCGAGCTAGTAGGGATATCACTGTGGAAGGGCATGATGTGCCGAAGCCAATTCGGTCTTTTCATGAGGCTAATTTTCCTGATTACTGTCTTGATGTCATTGCCAAGTTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACCGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGTCGTATCTACTTCCTGCTTTAGTTCATGTCAGTGCACAACCTCGATTGGCACAAGGGGAAGGTCCCATTGTCTTGGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTCGGGGGACGATCAAATATTAGATGTACATGCATATACGGCGGTGCTCCAAAGGGGCCTCAAATCCGTGACCTTAGAATGGCATACAAACCTGCAGAGAGTGACATACCTTGTCTTGGATGA 687 0.4469 GSGGRGGSQGFRGSGRGGSGGRGGGFGGRHGSSKDDLNNINLPKQDFRNLVPFQKNFYIESPQIQAMSDIQVMQYRASRDITVEGHDVPKPIRSFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLAQGEGPIVLVLAPTRELAVQIQQEAMKFGGRSNIRCTCIYGGAPKGPQIRDLRMAYKPAESDIPCLG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33386g00001 228 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Trme33386g00001 228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 218 IPR014001 -
Trme33386g00001 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 214 IPR027417 -
Trme33386g00001 228 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 212 - -
Trme33386g00001 228 MobiDBLite consensus disorder prediction 1 39 - -
Trme33386g00001 228 Pfam DEAD/DEAH box helicase 117 214 IPR011545 GO:0003676|GO:0005524
Trme33386g00001 228 SMART ultradead3 112 225 IPR014001 -
Trme33386g00001 228 Gene3D - 56 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33386g00001 Trme-Chr33386 1 1067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33386g00001 81 213 Eukaryotic Initiation Factors Gene Family AT3G19760 33.083 3.05e-13 66.2