Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33372g00001 ATGTGGTCAAGTCGTGATGCTGATGCAAGGAAAAGTGGCAGAGGAAATRTGTTTGTTAAGAACTTAGCAGAATCCATAGATAATGTGGGACTACATGATTTATTTCACAAATATGGGAATATTTTGTCCAGCAAAATTGTCATGTCTGAGGATGGGAAGAGCAAAGGGTTTGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGAAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGTTCTTTTCCTGATCCGGATGCCAAGGATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCATATCTTAAAGAAAAGTTCTCCTCTTTTGGAAAGATTATTAGCTTGGCTATTGCAAAGGATGGGAATGGGTTGTCAAAAGGCTTTGGATTTGTGAACTATGACAACCCAGATGATGCTAGACGAGCAATGGAAGCAATGAATGGATCACAATTTGGTAATTTGTTTATCTTTTTAGTACTGGGTCTTTTGTGCACAAAATTGCACTTTCCTGGATGTTGA 579 0.3782 MWSSRDADARKSGRGNXFVKNLAESIDNVGLHDLFHKYGNILSSKIVMSEDGKSKGFGYIQFDSEESANDAIQKMNGSTVRDKKIYVGKFIRKSERSFPDPDAKDTNLYVKNLDPDITEAYLKEKFSSFGKIISLAIAKDGNGLSKGFGFVNYDNPDDARRAMEAMNGSQFGNLFIFLVLGLLCTKLHFPGC 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33372g00001 192 Gene3D - 96 178 IPR012677 -
Trme33372g00001 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 173 IPR000504 GO:0003723
Trme33372g00001 192 PANTHER RNA BINDING PROTEIN 14 178 - -
Trme33372g00001 192 SMART rrm1_1 16 88 IPR000504 GO:0003723
Trme33372g00001 192 SMART rrm1_1 107 179 IPR000504 GO:0003723
Trme33372g00001 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 174 IPR000504 GO:0003723
Trme33372g00001 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 85 IPR000504 GO:0003723
Trme33372g00001 192 SUPERFAMILY RNA-binding domain, RBD 18 178 IPR035979 GO:0003676
Trme33372g00001 192 Gene3D - 16 95 IPR012677 -
Trme33372g00001 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 92 IPR000504 GO:0003723
Trme33372g00001 192 FunFam Polyadenylate-binding protein 9 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33372g00001 Trme-Chr33372 161 1005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33372g00001 16 96 Eukaryotic Initiation Factors Gene Family AT2G36660 35.802 1.21e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33372g00001 K13126 - gmx:100807057 276.559