Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3330g00001 GGCGGGATAATTGCGACAAACAGGCAAGCAGAGCCACGTGGTTGCCAAACAGTAGGTGGAGAATTGCGGCAAACAGGCGAGCAGAGCCACACAGTTGCAAGGTGGCAAGACGATGTGGTCATGTGGGGCCATGGTCGTTCTGGTGAGACCTCCTGCGGTGGTTGTGCATTGAGAACACGCCATTTTGCCGCAATCGAGCACGGAAGTGCACCACCTTGTGACAAGGCCCTGTGGCATTGCTGCACGCAATGTACTGGTGCCAGTTGTCATCTTGATGTACCACCTGCTTATCCATATCCGGATCCTTACTACAGAAGTGTCTTTGCTCCCTATGATGCACAACCATACCCACTGCAACCCTACGGTGGACATCCAATGGCCAATCTTCAGTTAATGGGAATCCAGCATCCAGGTGTTCCTTTGCCTACTGATGCCGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATTTTAAGACGCAGGCAGTCTCGTGCTAAAGCTGAATCAGAAAAGAAAGTTACAAGGAATCGGAAGCCATACTTGCACGAATCTCGACATCTGCACGCGCTGAAAAGAGCAAGAGGATGTGGAGGTCGGTTTCTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGGATCAGCTGACAATTCACATTCCAATATCAATCTCAATTCTGATAGAAACGATCTTGCACCATCCGATAAAAATTCTTGA 729 0.4842 GGIIATNRQAEPRGCQTVGGELRQTGEQSHTVARWQDDVVMWGHGRSGETSCGGCALRTRHFAAIEHGSAPPCDKALWHCCTQCTGASCHLDVPPAYPYPDPYYRSVFAPYDAQPYPLQPYGGHPMANLQLMGIQHPGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVTRNRKPYLHESRHLHALKRARGCGGRFLNSKKDENQQDEVGSADNSHSNINLNSDRNDLAPSDKNS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3330g00001 242 PRINTS CCAAT-binding transcription factor subunit B signature 149 171 IPR001289 GO:0003700|GO:0006355
Trme3330g00001 242 PRINTS CCAAT-binding transcription factor subunit B signature 180 203 IPR001289 GO:0003700|GO:0006355
Trme3330g00001 242 ProSitePatterns NF-YA/HAP2 subunit signature. 151 171 IPR018362 GO:0003677|GO:0016602
Trme3330g00001 242 MobiDBLite consensus disorder prediction 202 216 - -
Trme3330g00001 242 Gene3D - 146 207 - -
Trme3330g00001 242 MobiDBLite consensus disorder prediction 164 180 - -
Trme3330g00001 242 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 80 230 IPR001289 GO:0003700|GO:0006355
Trme3330g00001 242 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 148 203 IPR001289 GO:0003700|GO:0006355
Trme3330g00001 242 SMART cbf3 145 206 IPR001289 GO:0003700|GO:0006355
Trme3330g00001 242 MobiDBLite consensus disorder prediction 201 242 - -
Trme3330g00001 242 MobiDBLite consensus disorder prediction 162 184 - -
Trme3330g00001 242 ProSiteProfiles NF-YA/HAP2 family profile. 146 206 IPR001289 GO:0003700|GO:0006355
Trme3330g00001 242 MobiDBLite consensus disorder prediction 217 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3330g00001 Trme-Chr3330 84 2048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3330g00001 94 242 CCAAT-HAP2 Transcription Factor Family AT1G30500 60.403 1.45e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme3330g00001 CBFB_NFYA 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3330g00001 K08064 - gmx:100809036 270.396