Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33294g00001 ATGGTTACAACAGGTGGTACCAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATCTACTGGTTGGAACCCCAGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGCGTTCTTAAAGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTGCTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTGATTAGTTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAACCGGGTTGA 384 0.4167 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLISFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKAANKPVNYLLQFSEPG 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33294g00001 127 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 48 56 IPR000629 -
Trme33294g00001 127 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 115 - -
Trme33294g00001 127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 103 IPR027417 -
Trme33294g00001 127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Trme33294g00001 127 Gene3D - 1 112 IPR027417 -
Trme33294g00001 127 Pfam DEAD/DEAH box helicase 3 90 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33294g00001 Trme-Chr33294 103 977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33294g00001 5 112 Eukaryotic Initiation Factors Gene Family AT1G72730 39.450 2.71e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33294g00001 K12614 - atri:130810470 216.853