Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33283g00001 ATGACCAATTTTGATTTGGAAGCTGCAGATCTTGATGAGGATGGCACTGTTGGGGCTGCTGAATTCGTTATTTATAAGCTGAAAGAGATGGGGAAGATTACTCAAGAAGATATAACACTTGTGATGAAGGAGTTTGAAGAACTTGATGTTGATCAGTCTGGTACACTGTCTGTTTCTGATATAACACTTGCTCAATCATCTTAG 204 0.3873 MTNFDLEAADLDEDGTVGAAEFVIYKLKEMGKITQEDITLVMKEFEELDVDQSGTLSVSDITLAQSS 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33283g00001 67 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Trme33283g00001 67 Pfam EF hand 43 59 IPR002048 GO:0005509
Trme33283g00001 67 Pfam EF hand 6 22 IPR002048 GO:0005509
Trme33283g00001 67 Gene3D - 5 67 - -
Trme33283g00001 67 SUPERFAMILY EF-hand 7 62 IPR011992 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33283g00001 1 67 Ion Channels AT5G55630 70.149 2.32e-27 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33283g00001 K05389 - gmx:100777388 117.472