Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33177g00001 ATGCCTAAGCCTAAGGTTGTTATCGACAAAAAGAAAAACTTGATAATGATCTTATCTCTTACTTTGGGTGTTGTTTCATTGATTTGTTTGGTCATCGCGGCGTCCATTTTTTTCACTTACAGGCATCAAGTTAATAGGTATGCAATGTTGTCTGAAAGTGAAAAACTGGGATTTACTGAAGAATGCTCCTTGAGCTCATTTTCTTTTGACGAACTTTCAAAATCAACTGGGGGATTTTCAGAAGAGATAGGGAGAGGATCATTTGGAGCTGTTTATAAAGGTAAAATAGGCGACAATAACAGAAGCATTGCTGTGAAGAGATTGGAGGAGAGAATTGCTGATGAAGGAGAGAGGGAATTCCGAGCTGAAATTACTGCTATTGCTCGAACTCATCATAGGAATTTGGTTAAGCTTATTGGTTTTTGTATAGAAGGTTCCAACAAGCTTCTTGTTTATGAATTTGTCAGCAAAGGGTCTCTTGCAAATGTCCTTTTTGAAGGGGAAGTGAAACTATCTTGGAAAGAGAGAATGAAACTCGCGTTGGACGTGGCTAGAGGAATATTGTATCTACACGAAGAGTGTGAAGTCCGAATCATTCATTGCAATATAAATCCTCAAAATATACTTATGGATGAATCATGGACTGCAAAAATATCTGATTTTGGATTGGCAAGACTTTCAAAGAGGGGCCATTCAAGAACTAAAACAGAGGAGGATGGCACAAGCAGGTACTTGGCACCCGAATGGCAGAAGGAGGATGCATCAGTATCGGTAAAAGCTGACATTTACAGTTTTGGTGTGGTATTATTGGAGATTATATGCTGCGGAAGAAGTACAGAGATGAGTGATATTTCCTCAGCTGATGAAATTCTATTTTCCAGTTGG 885 0.3887 MPKPKVVIDKKKNLIMILSLTLGVVSLICLVIAASIFFTYRHQVNRYAMLSESEKLGFTEECSLSSFSFDELSKSTGGFSEEIGRGSFGAVYKGKIGDNNRSIAVKRLEERIADEGEREFRAEITAIARTHHRNLVKLIGFCIEGSNKLLVYEFVSKGSLANVLFEGEVKLSWKERMKLALDVARGILYLHEECEVRIIHCNINPQNILMDESWTAKISDFGLARLSKRGHSRTKTEEDGTSRYLAPEWQKEDASVSVKADIYSFGVVLLEIICCGRSTEMSDISSADEILFSSW 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33177g00001 295 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 291 - -
Trme33177g00001 295 Gene3D Transferase(Phosphotransferase) domain 1 155 292 - -
Trme33177g00001 295 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Trme33177g00001 295 ProSiteProfiles Protein kinase domain profile. 77 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33177g00001 295 SUPERFAMILY Protein kinase-like (PK-like) 61 277 IPR011009 -
Trme33177g00001 295 Gene3D Phosphorylase Kinase; domain 1 40 154 - -
Trme33177g00001 295 FunFam Os07g0541700 protein 155 242 - -
Trme33177g00001 295 FunFam S-receptor-like serine/threonine-protein kinase 46 154 - -
Trme33177g00001 295 Pfam Protein tyrosine and serine/threonine kinase 79 279 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33177g00001 Trme-Chr33177 127 1011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33177g00001 17 281 Receptor kinase-like Gene Family AT2G23950 40.741 6.29e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme33177g00001 PK_Tyr_Ser-Thr 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33177g00001 - - cam:101496142 500.36