Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33173g00001 GTAAAAAAAACTGCAGAAAATGTTGGTGAGGCAGTGAGAGAACTTCCAGATGCTAATCAGAAACCAGATGATTTATGGATGAATCATTCAAAAGTGGTTCACCCTAAACCTCATAGGAAGGATGATGTTCCTTGGAAAGCAATCCAAAAGATTACAGAAAGTGGCGAACAGATAGGGCTAAAGCACTTTAGGCCAATTAAACCTTTGGGATCTGGAGACACCGGAAGCGTGCATCTGGTAGAGCTAGAGGGAACTGGTCAATACTTTGCCATGAAGGCTATGGACAAGGGTGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGGTTTGA 399 0.4286 VKKTAENVGEAVRELPDANQKPDDLWMNHSKVVHPKPHRKDDVPWKAIQKITESGEQIGLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33173g00001 132 MobiDBLite consensus disorder prediction 1 20 - -
Trme33173g00001 132 MobiDBLite consensus disorder prediction 1 27 - -
Trme33173g00001 132 ProSiteProfiles Protein kinase domain profile. 63 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33173g00001 132 SUPERFAMILY Protein kinase-like (PK-like) 38 131 IPR011009 -
Trme33173g00001 132 PANTHER FLIPPASE KINASE 1-RELATED 27 131 - -
Trme33173g00001 132 Gene3D Phosphorylase Kinase; domain 1 51 132 - -
Trme33173g00001 132 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33173g00001 Trme-Chr33173 283 1105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33173g00001 1 132 AGC Kinase Gene Family AT3G45780 81.818 1.13e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme33173g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33173g00001 K20715 - gmx:100817565 249.595