Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3313g00001 ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAGGAAGAAGAAACAACTACACTTGATAACATGTTGGAGGGTGAAGAAAAATTGCACAATGGAGGTATTGATGGAAGGCATATGGTTGATGCTGGCATCGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCCCCCACGGTTGATATGGTGATGTTCAAGGAAGATACAAATCTTGAACCACTTTCTGGCATGGAATTCGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTCATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACCAAAAGAGAGTATGATAAATCCTTCAATCGACCACGAGCACGACAGAACAAGCAAGAATCTGAAAATTCAACCGGTCGAAGATCTTGCTCTAAGACCGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCAGATGGGAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCACGAGCTTTTACCTGCCCAGGCAGTAAGTGAGCAAACAAGAAGAATGTATGCTGTGATGGCCAGGCAGTTTGCAGAATACAAAACTGTGGTTGGTATCAAGAATGAAAAGAATCCGTTCGATAAAGGTCGGAATTTGGGTCTGGAGTTTGTGGAGGCCAAACTTATGCTTGATTTTTTTATTCAGATGCAAAGCATGAACTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGTACTTTTTGTTGGGGTGAACCAGCACTACCAATTTATATTACTCGGGTGTGCCTTGATATCAGATGAAAGTGCCGCAACATTTTCTTGGCTATTACAGACGTGGCTGAAAGGTGTTGGTGGCCAAGTTCCAAAAGTGATAATTACGGACCATGACATGACTTTGAAGTCAGTTATTTCAGATGTATTTGCTAGTGCTTGCCATTGTGTTTGCTTATGGCATATACTGGGGAAGGTATCTGAAAATCTAGCTCATGTAATTAAAAAACATGCGAATTTTATGACAAAATTTGAAAAATGCGTATTTAGGTCGTTAACCAGTGATGACTTTGACAATAGATGGGAGAAAATTTTGGATAGATTTGAGCTTCGACAGGATGAATGCATGCAGTCTTTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTGTTTTTAGGTGGCATGTCTACTCCCCAACGATCTGAAAGTGTAAATTCATTCTTTGACAAATATGTTCACAGGAAGACCTATATACAAGATTTTGTTAAACAGTATGAAACCATCTTGCAAGACAGGTATGAAGAGGAAGCAAAGGCAGATTCTGATACTTGGAACAAAGTAGCAACATTAAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCAGGGATTTTCACCCATACAGTATTCAAGAAGATTCAAGCTGAGATTATTGGTGCAGTGGCTTGCCATCCTAAACTTGACAGGCAGGATGAGACAATCGTTGTTCACAGGGTGCATGATATGGAAACAAGAAAAGACTTTTTTGTTGTGGTGAATGAAGTAAATTCAGAGTTGTCTTGTATATGTCGGCAATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATATTCTGGCCATTCGGTGTTCCCATCTCAATATGTTTTGAAGCGGTGGACAAAAGATGCAAAGATCAGAAATGTAACAGGGGAAGAATCTGAACATATGCTGGCTAGGGTGCAACGATACAATGATTTATGTCACCGATCACTAAAACTGAGCGAAGAGGGATCATTGTCTCAAGATAGTTATGGTATTGCATTCCATGCACTAAATGAGGCGCACAAAAATTGTGTGAGTGTTAACAATTCTAGCAAGAGTCCTACAGAAGCTGGTACATCAGGGGTTCATGGTCAGCTTTCCATTGAAGAAGATACCCAAAGTAGAAATATGGGAAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAG 2169 0.39 MDIDLRLPSGEHDKEEEETTTLDNMLEGEEKLHNGGIDGRHMVDAGIEVHALNGGDLNSPTVDMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAVMARQFAEYKTVVGIKNEKNPFDKGRNLGLEFVEAKLMLDFFIQMQSMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLVLFVGVNQHYQFILLGCALISDESAATFSWLLQTWLKGVGGQVPKVIITDHDMTLKSVISDVFASACHCVCLWHILGKVSENLAHVIKKHANFMTKFEKCVFRSLTSDDFDNRWEKILDRFELRQDECMQSLYEDRKLWAPTFMKDVFLGGMSTPQRSESVNSFFDKYVHRKTYIQDFVKQYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGIFTHTVFKKIQAEIIGAVACHPKLDRQDETIVVHRVHDMETRKDFFVVVNEVNSELSCICRQFEYKGYLCRHALVVLQYSGHSVFPSQYVLKRWTKDAKIRNVTGEESEHMLARVQRYNDLCHRSLKLSEEGSLSQDSYGIAFHALNEAHKNCVSVNNSSKSPTEAGTSGVHGQLSIEEDTQSRNMGKSNKKKNPTKKKK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3313g00001 723 MobiDBLite consensus disorder prediction 678 706 - -
Trme3313g00001 723 MobiDBLite consensus disorder prediction 678 723 - -
Trme3313g00001 723 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Trme3313g00001 723 Pfam SWIM zinc finger 569 602 IPR007527 GO:0008270
Trme3313g00001 723 MobiDBLite consensus disorder prediction 132 165 - -
Trme3313g00001 723 Pfam MULE transposase domain 288 380 IPR018289 -
Trme3313g00001 723 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Trme3313g00001 723 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 677 IPR031052 GO:0006355
Trme3313g00001 723 SMART 26again6 579 606 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3313g00001 Trme-Chr3313 14 2182 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme3313g00001 FAR1 2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3313g00001 - - cam:101505784 1359.36