Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33136g00001 ATGGACCCTGAAAATGCTTCCAAAATAATGGGTTTACTTCTTCTTCAAGATCATGGTGAAAAAGAAATGATTAGATTAGCTTTTGGTCCAGAATCACTTCTTCATTCAGTGATTTTCAAAGCTAGAAATGAGTTAGGATTAAGTTTGAATTCACCTTCAACACCTCAATCACAACCTTCACCTTTTCATTCAAGTAATCCTGTCCCTATTTCAAGACAAAATTCAAACTCTTCAAGACTTATAAATAGTGGCATGACTCTTCCTTCTACTCTTAGTATTCCAAATCCATCTTCAAATTCAGCTTCTTGGGCTGATGATTCTCCTTCCATGAATAATAGTTCTTCACCTTTTTATGGAAATGGAGGTGTTTCTGATTCAATTGATGAGTTTCAACTTCAAGAACAACTCTCTTTTCTTAATGATGGAAACTCTTCACCTTCACTTGTTTCCAAGAATTCTGATTTGTTTTACTCTCAATCAGAGTTATCTTCTAGTCCTAATAGTGGAAGTATTGGTAATGGTGTTGACCCTTCATTTTTTCCATCTTATGGTTATGGANNNNTNNNNNNNNNNAGAAGTTGTTCTGTGAATGATGCTGCATGTTTAGTTTCTGAGGATCCTAATTCTGGTTTAGGTTGGAAACCATGTCTTTACTATGCTAGAGGTTACTGCAAGAATGGTACTAGTTGTAGGTTTCTTCATGGAGGATTTGGTGATGGTGGTGAAGGTGTTGGTTCAATGGTTGGTTCTCCTAATAAGATTGAGATGTTGGATCAGTGTCATGAACANNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAGAGCATGAGTTTGCTTCTTCAGCACCAACAAAGTGATGCTCAAAG 920 0.325 MDPENASKIMGLLLLQDHGEKEMIRLAFGPESLLHSVIFKARNELGLSLNSPSTPQSQPSPFHSSNPVPISRQNSNSSRLINSGMTLPSTLSIPNPSSNSASWADDSPSMNNSSSPFYGNGGVSDSIDEFQLQEQLSFLNDGNSSPSLVSKNSDLFYSQSELSSSPNSGSIGNGVDPSFFPSYGYGXXXXXRSCSVNDAACLVSEDPNSGLGWKPCLYYARGYCKNGTSCRFLHGGFGDGGEGVGSMVGSPNKIEMLDQCHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSMSLLLQHQQSDAQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33136g00001 306 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 258 - -
Trme33136g00001 306 SUPERFAMILY CCCH zinc finger 213 235 IPR036855 GO:0046872
Trme33136g00001 306 Gene3D - 204 265 - -
Trme33136g00001 306 ProSiteProfiles Zinc finger C3H1-type profile. 210 237 IPR000571 GO:0046872
Trme33136g00001 306 Coils Coil 292 292 - -
Trme33136g00001 306 MobiDBLite consensus disorder prediction 47 122 - -
Trme33136g00001 306 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 235 IPR000571 GO:0046872
Trme33136g00001 306 SMART c3hfinal6 212 236 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33136g00001 Trme-Chr33136 149 1068 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme33136g00001 zf-CCCH 2.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33136g00001 - - qsa:O6P43_001416 292.737