Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme3311g00001 | TATGATGGGACTATATTTCACCGCAACATTAAAGGTTTTATGATTCAAGGTGGAGACCCAACTGGTACTGGCAAAGGAGGTACTAGTATACGGGGCAAGAAATTAAACGACGAGATAAGAGAATCATTGAAGTACAATGCTAGGGGAATATTGTCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATAAGTTATGCAAAGCAGCCGCATTTGAATGGACTATATACTGTGTTTGGAAGAGTAATTCATGGACTTGAAGTTCTTGATCTCATGGAAAAGACTCCAACAGCCGCAGGGGATCGGCCACTTGCAGAGATAAGGCTCAACCGTTTTTCTTGGACAGGAATGATATCTGCCTATGCCCGCCATGGAGACCATGTGTCAGTGATGAGTTTATATAAGGAAATGGAGCCGGAAGGAAGCAGTCCTGACTCCATTACTTTCCTTTCTGTTTTGGTTGCATCTTGTAGAAAGGGACTGCTGGGCCGTGTGGGACGGCTAGATGAGGCGGAAGTGTTGATGCATCAGATTCCAGGAGGACCTGGACTGTTAGTGTTGCAAAGCTGCTTCAGGTCAATATGTGTTGTTGGCAAACTTGTATGCTGA | 618 | 0.4434 | YDGTIFHRNIKGFMIQGGDPTGTGKGGTSIRGKKLNDEIRESLKYNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGLEVLDLMEKTPTAAGDRPLAEIRLNRFSWTGMISAYARHGDHVSVMSLYKEMEPEGSSPDSITFLSVLVASCRKGLLGRVGRLDEAEVLMHQIPGGPGLLVLQSCFRSICVVGKLVC | 205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme3311g00001 | 205 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 1 | 116 | IPR044666 | - | |
| Trme3311g00001 | 205 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1 | 113 | IPR002130 | GO:0000413|GO:0003755 | |
| Trme3311g00001 | 205 | SUPERFAMILY | Cyclophilin-like | 1 | 115 | IPR029000 | - | |
| Trme3311g00001 | 205 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 1 | 18 | IPR020892 | GO:0003755|GO:0006457 | |
| Trme3311g00001 | 205 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 117 | IPR002130 | GO:0000413|GO:0003755 | |
| Trme3311g00001 | 205 | NCBIfam | pentatricopeptide repeat | 115 | 148 | IPR002885 | - | |
| Trme3311g00001 | 205 | Pfam | PPR repeat family | 113 | 161 | IPR002885 | - | |
| Trme3311g00001 | 205 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 6 | 18 | IPR002130 | GO:0000413|GO:0003755 | |
| Trme3311g00001 | 205 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 49 | 64 | IPR002130 | GO:0000413|GO:0003755 | |
| Trme3311g00001 | 205 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 77 | 92 | IPR002130 | GO:0000413|GO:0003755 | |
| Trme3311g00001 | 205 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 64 | 76 | IPR002130 | GO:0000413|GO:0003755 | |
| Trme3311g00001 | 205 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 113 | 147 | IPR002885 | - | |
| Trme3311g00001 | 205 | Gene3D | - | 1 | 117 | IPR029000 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme3311g00001 | Trme-Chr3311 | 3 | 2419 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme3311g00001 | 1 | 112 | U-box Gene Family | AT5G67530 | 58.036 | 4.10e-38 | 136 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme3311g00001 | K12734 | - | vvi:100247290 | 214.542 |