Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33091g00001 GTGTGTTCTGCTTTGTTTGCTGTTGCTACAATTTTCAAAGCTCGGTCTTTGAAAAAGGCTAGCGAAGCTCGTGCATGGAAACTAACTGCATTCCAGCGTTTGGACTTCACGGTTGATGATGTTCTTGATTCCTTGAAAGAGGATAATATCATAGGAAAAGGTGGTGCTGGCATTGTTTACAAAGGAGCAATGGCTAATGGTGATCTTGTTGCGGTGAAAAGGCTACCGGCTATGAGTAGAGGATCTTCACATGATCATGGTTTTAATGCTGAGATTCAAACTTTGGGCCGAATTCGACACCGACACATTGTTAGATTATTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNTGGTTTATGAGTACATGCCTAATGGAAGTTTAGGTGAAGTTCTTCATGGTAAGAAAGGTGGTCATTTGCATTGGGATACAAGGTACAAAATTGCTGTGGAATCTGCAAAGGGTCTTTGTTATCTTCATCATGATTGTTCACCGCTTATCGTTCATCGTGATGTGAAATCAAACAATATCTTACTTGATTCAAGTTTTGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGCAAGATTCTGGAACTTCTGAATGCATGTCTGCTATTGCTGGTTCTTATGGATACATAGCTCCAGGTGTGTGTAGAAGAGAACTGTATAAGATATTGTTCTGA 690 0.3812 VCSALFAVATIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDSLKEDNIIGKGGAGIVYKGAMANGDLVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLXXXXXXXXXXXXVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVESAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPGVCRRELYKILF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33091g00001 229 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 14 122 - -
Trme33091g00001 229 Gene3D Phosphorylase Kinase; domain 1 14 122 - -
Trme33091g00001 229 PIRSF ILK 4 227 - -
Trme33091g00001 229 Pfam Protein kinase domain 47 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33091g00001 229 FunFam Protein kinase superfamily protein 123 195 - -
Trme33091g00001 229 Gene3D Transferase(Phosphotransferase) domain 1 123 227 - -
Trme33091g00001 229 SUPERFAMILY Protein kinase-like (PK-like) 37 223 IPR011009 -
Trme33091g00001 229 SMART serkin_6 45 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33091g00001 229 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Trme33091g00001 229 ProSiteProfiles Protein kinase domain profile. 45 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme33091g00001 229 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33091g00001 Trme-Chr33091 2 801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33091g00001 2 217 Receptor kinase-like Gene Family AT5G65700 87.963 1.39e-136 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme33091g00001 Pkinase 5.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33091g00001 - - vvi:100855393 393.275