Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme330692g00001 CCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCTGCGACATCTGGAGTTTAGGGATGGTAGTACTCGAGTGTGCCATAGGACGGTTTCCTTATATACAATCTGAAGATCAGCAAGCATGGCCTAGTTTCTATGAGCTTTTGCAAGCAATTGTCGAAAGTCCTCCACCTTCTGCTCCACCTGATCAATTCTCTCCTGAGTTCTGTTCATTTGTGTCATCCTGGTAA 228 0.4386 PERISGSTYDYSCDIWSLGMVVLECAIGRFPYIQSEDQQAWPSFYELLQAIVESPPPSAPPDQFSPEFCSFVSSW 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme330692g00001 75 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 1 74 - -
Trme330692g00001 75 SUPERFAMILY Protein kinase-like (PK-like) 1 73 IPR011009 -
Trme330692g00001 75 ProSiteProfiles Protein kinase domain profile. 1 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme330692g00001 75 Pfam Protein kinase domain 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme330692g00001 75 Gene3D Transferase(Phosphotransferase) domain 1 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme330692g00001 Trme-Chr330692 61 288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme330692g00001 1 74 MAP Kinase Kinase Gene Family AT5G56580 85.135 6.53e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trme330692g00001 Pkinase 3.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme330692g00001 K04368 - gmx:100792457 145.591