Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33060g00001 AACGCTGAGGGTGACGGAGTGAAGGATTCTCCGAGGAAGATCTCTGATGGATCAAAAGAAGCTGAAAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAACTAAAGACAACTCTCCTAGTGGAGATGCTTCTAAAGATAATTTTATTCATGTGAGAGCTAGAAGAGGTCAAGCCACCAATAGCCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTTCAATCACTGCAACAACAGGTTGAGGTATGA 342 0.4064 NAEGDGVKDSPRKISDGSKEAEKKPKVEQSGKQTKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEV 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33060g00001 113 SMART finulus 63 113 IPR011598 GO:0046983
Trme33060g00001 113 FunFam Basic helix-loop-helix transcription factor 54 113 - -
Trme33060g00001 113 MobiDBLite consensus disorder prediction 1 31 - -
Trme33060g00001 113 Pfam Helix-loop-helix DNA-binding domain 60 108 IPR011598 GO:0046983
Trme33060g00001 113 Gene3D - 54 113 IPR036638 GO:0046983
Trme33060g00001 113 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 112 IPR024097 GO:0006355
Trme33060g00001 113 MobiDBLite consensus disorder prediction 1 67 - -
Trme33060g00001 113 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 107 IPR011598 GO:0046983
Trme33060g00001 113 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33060g00001 Trme-Chr33060 436 1046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33060g00001 17 113 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 77.778 4.45e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme33060g00001 HLH 4.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33060g00001 - - gmx:100794464 184.882