Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33042g00001 ATGGCACAGTCCAGAAAGAGAGGAAGAAAATCCAAGACCGAAATCGGAGGTTTTAATGATTTTGCTGATTTAGCTAGAGCGTTGGAGGAGAATGAGTTACCTACGATGGTTTTTGATGAAGCTCCAGTTTTTTTACCTAGGGTGAAAAAGAAGACAAAAGCAAAGAAGACAAAAAAGGGAGATCCTAAGCCAGTGTTGTTATGGCATGCTTGGCAAGAAGAACATGAGAGATGGATTGATCAGAATTTGTTGGAAGACGTTAACTTGGATCAAAGTGAAGTGATGCATGAGACGGCCGAGGCATCGTCAGATCTGATTATTCCTTTGCTGAGGTACCAAAGGGAATGGTTAGCCTGGGCTTTGAAGCAGGAAAGTTCTGTAACTAGAGGAGGAATCCTCGCTGATGAAATGGGCATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAACGTGAATTACAACAAATGAGTTGTGAANNNNNNNNNNTNNNNNNNNNNCCAGGGTCATCTAAAGTCCTTCCTGTGATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCTGTTAATCAGTGGGTTACTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAAGTTCTGGTTTATCACGGGCCGAAGAGAGAGAAGATTGCCGAACAGTTCTCAGAGTATGATTTTGTTATAACAACATATTCTCTTGTTGAATCAGAGTACAGAAAGCATGTGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGAAAATTATATAACCCGA 781 0.4059 MAQSRKRGRKSKTEIGGFNDFADLARALEENELPTMVFDEAPVFLPRVKKKTKAKKTKKGDPKPVLLWHAWQEEHERWIDQNLLEDVNLDQSEVMHETAEASSDLIIPLLRYQREWLAWALKQESSVTRGGILADEMGMGKTIQAIALVLAKRELQQMSCEXXXXXXXPGSSKVLPVIKGTLVICPVVAVNQWVTEIDRFTLKGSTKVLVYHGPKREKIAEQFSEYDFVITTYSLVESEYRKHVMPPKEKCPYCGKLYNP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33042g00001 260 Coils Coil 148 161 - -
Trme33042g00001 260 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 260 IPR014001 -
Trme33042g00001 260 Pfam SNF2-related domain 124 241 IPR000330 GO:0005524|GO:0140658
Trme33042g00001 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 242 IPR027417 -
Trme33042g00001 260 Gene3D - 111 251 IPR038718 -
Trme33042g00001 260 CDD DEXDc_SHPRH-like 109 259 - -
Trme33042g00001 260 SMART ultradead3 105 260 IPR014001 -
Trme33042g00001 260 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 27 239 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33042g00001 28 260 RAD5 or RAD16-like Gene Family AT1G05120 54.274 1.49e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme33042g00001 SNF2_N 6.2e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33042g00001 K15083 - gmx:100798333 306.219