Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3303g00001 ATGCTTTTACTTGCGATATATTTTTTCTACAGATTCCGGAGGAGCATTGTTGGGAAGTCAAAGACTGAAGGTGAGTACGAAAGACACGAGAACGATATGGATCTCCCCTTGCTTAATTTGTCAACAATTATTATTGCCACCGACAACTTTTCAGAGAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTCTATTTGGGAAAATTAGGAAGTGGGCTAGAAATTGCTGTCAAGAGACTTTCACAGAGCTCAAAACAAGGGATGAGAGAATTCATAAATGAAGTAAAACTAATTGCAAATGTTCAGCACCGAAATCTTGTTAAGCTTATTGGCTGTTGCATTCAGAGACATGAAAAGTTGCTAGTTTATGAATACATGTCTAATGGTAGCCTAGACTACTTCATTTTTGATCGTACCAAAAGTCGATTGCTAGATTGGCCAAAGCGATTCCACATAATTTGTGGAATCGCTAGAGGGCTTTTGTATCTTCATCAAGATTCTCGATTGAGGATTATTCATAGAGATCTCAAAACAAGTAATGTTTTACTAGATGATACTTTGAATCCCAAAATATCAGATTTTGGAATGGCTAGAACTTTTGGAGGAAACCAAATTGAAGGAAACACAAATATAATTGTTGGGACATATGGGTACATGGCACCAGAGTATGCTATTGACGGGCAATTTTCCGTGAAATCTGATGTTTTCAGCTTTGGTATTTTGATATTAGAGATTATATGTGGGAAGAAAAACCGAGTCCGTTATCGTGCAAAGCAAACTCTTAACCTTGTTGCTTATGCATGGACATTCTGGAAACATGAAAGAGCTTTACAAATAATCGACACAAACATTGAGGATTCAACCATTGTATCGGAAGTATCACGTTGCATACATGTTGCACTCTTATGCGTGCAACAATACCCAGAGGATAGGCCTACCATGGCTGATGTGATTCTAATGTTAGGGAGTGAGATGACATTGGATGAGCCTAAGGAACCAGATTTTATTACGAGGAGGGAATCTATTGAAGCAAATTCAAGCTCAAGTGGGAAGGATATAAGTTCAAACTATGAATTGACCATAACCTCTTTAAGTGTTCGATGA 1104 0.3795 MLLLAIYFFYRFRRSIVGKSKTEGEYERHENDMDLPLLNLSTIIIATDNFSEKNKIGEGGFGPVYLGKLGSGLEIAVKRLSQSSKQGMREFINEVKLIANVQHRNLVKLIGCCIQRHEKLLVYEYMSNGSLDYFIFDRTKSRLLDWPKRFHIICGIARGLLYLHQDSRLRIIHRDLKTSNVLLDDTLNPKISDFGMARTFGGNQIEGNTNIIVGTYGYMAPEYAIDGQFSVKSDVFSFGILILEIICGKKNRVRYRAKQTLNLVAYAWTFWKHERALQIIDTNIEDSTIVSEVSRCIHVALLCVQQYPEDRPTMADVILMLGSEMTLDEPKEPDFITRRESIEANSSSSGKDISSNYELTITSLSVR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3303g00001 367 ProSiteProfiles Protein kinase domain profile. 50 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3303g00001 367 SMART serkin_6 50 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3303g00001 367 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 126 329 - -
Trme3303g00001 367 Gene3D Transferase(Phosphotransferase) domain 1 126 339 - -
Trme3303g00001 367 FunFam receptor-like serine/threonine-protein kinase SD1-8 21 125 - -
Trme3303g00001 367 Gene3D Phosphorylase Kinase; domain 1 14 125 - -
Trme3303g00001 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 363 - -
Trme3303g00001 367 SUPERFAMILY Protein kinase-like (PK-like) 32 321 IPR011009 -
Trme3303g00001 367 Pfam Protein tyrosine and serine/threonine kinase 53 319 IPR001245 GO:0004672|GO:0006468
Trme3303g00001 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3303g00001 Trme-Chr3303 140 1734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3303g00001 1 352 Receptor kinase-like Gene Family AT4G23190 51.685 1.41e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme3303g00001 PK_Tyr_Ser-Thr 8.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3303g00001 - - gmx:100810407 516.924