Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme33017g00001 CAGTGCGAACGCACAGCTTTCATTTCCACTTCATCCACCGATCTAATCTGTCCCAATTGCAACGGTACTTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAATCCCAATCCTCTCCCTCCTTTCTTCTCCCACACCACAACCGATTTCCCCGCCGCAGGATTCTCCTTTCCCCTCATTTTCTCCGGTGCCGGCGCCGCCAATGCTTCTCAACCGTTCAATGATCTCTCCGCTTTATTATCGTCTCCAGCACCGCCTTCACCTTTCGGCGAAGCGTTTAACCCTGTCGCGTTTATTCAAAACTACCTCCGCAACATGAATGCCGGAGGAGGCAACGTTCAGTTCTTCCTCAACGATGCTGACGATCCGGCGAGACAGTTCCGGTTTCCCGGAAACGCGAATCCAGGAGATTATTTCTTTGGACCTGGACTTGAGGATCTGATCCAGCAATTAGCAGAGAACGATCCGAATCGGCGTGGGACACCGCCGGCGTCGAAGTCCGCCGTGGAAAAGCTTCCGGTTATTGAAGTTACGGAGGAGCTGCTGGAATCGGATTCATCGCAGTGTGCGGTGTGTAAAGACACATTTGCCCTTGGCGAAAAGGCGAAGCAGATGCCGTGTAAGCATATATATCATACTGATTGTATCTTGCCGTGGTTGGAATTGCATAATTCTTGTCCTGTTTGTCGTCATGAGTTGGCTACAGATGATCCTGATTATGAGCAGAGGGCTCGTGGTGGTGGCGGCGGAGGCGGTGCTGGTGGTGGTGGAGGAGATGATTCAGTGAGAACAAGGTTTAGGGTGTCTTTGCCATTTATGCCGTTTAGGCATGTACCTTCTTCTTCTGGTGCTGCTGCAGGGACAAGTAATGTTGGGAATGTTAATAACAATGATAACAACAATAGCAATAGTGGAAATAATAATGAGCAATCCAATACCGAAAATAGGGGAAATCAGAATTTTGAGTCAGGGACTAGACAAGAAGATCTTGACTGA 999 0.4915 QCERTAFISTSSTDLICPNCNGTFLEELETPIPNPNPNPLPPFFSHTTTDFPAAGFSFPLIFSGAGAANASQPFNDLSALLSSPAPPSPFGEAFNPVAFIQNYLRNMNAGGGNVQFFLNDADDPARQFRFPGNANPGDYFFGPGLEDLIQQLAENDPNRRGTPPASKSAVEKLPVIEVTEELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHTDCILPWLELHNSCPVCRHELATDDPDYEQRARGGGGGGGAGGGGGDDSVRTRFRVSLPFMPFRHVPSSSGAAAGTSNVGNVNNNDNNNSNSGNNNEQSNTENRGNQNFESGTRQEDLD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme33017g00001 332 MobiDBLite consensus disorder prediction 241 264 - -
Trme33017g00001 332 SUPERFAMILY RING/U-box 170 237 - -
Trme33017g00001 332 CDD RING-H2_RNF126-like 189 231 - -
Trme33017g00001 332 MobiDBLite consensus disorder prediction 283 326 - -
Trme33017g00001 332 Pfam Ring finger domain 189 231 IPR001841 -
Trme33017g00001 332 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Trme33017g00001 332 SMART ring_2 190 230 IPR001841 -
Trme33017g00001 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 237 IPR013083 -
Trme33017g00001 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 234 - -
Trme33017g00001 332 MobiDBLite consensus disorder prediction 278 332 - -
Trme33017g00001 332 FunFam E3 ubiquitin-protein ligase RING1-like 151 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme33017g00001 Trme-Chr33017 134 1132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme33017g00001 148 247 C3H Transcription Factor Family AT5G15820 54.000 1.48e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme33017g00001 K11982 - gmx:100818686 323.168