Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32999g00001 GTAGTGTTGGCTGGTGGTGGTGGACACTCATCCAACGGTGCTGTGGCCCAAGGTTCCCAATCTGACGGGGATTCCAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAATGATGAGGATCTCAGACAACCATTTTTGCAATTTGGGGATGTTGTCTCTGTGAAAATTCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGAACAGTGATTGGAAAGCAGACGGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCACGTGA 319 0.4639 VVLAGGGGHSSNGAVAQGSQSDGDSNNTTIFVGGLDSEINDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHV 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32999g00001 106 MobiDBLite consensus disorder prediction 12 29 - -
Trme32999g00001 106 SMART rrm1_1 29 96 IPR000504 GO:0003723
Trme32999g00001 106 SUPERFAMILY RNA-binding domain, RBD 18 103 IPR035979 GO:0003676
Trme32999g00001 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 93 IPR000504 GO:0003723
Trme32999g00001 106 Gene3D - 9 105 IPR012677 -
Trme32999g00001 106 FunFam Polyadenylate-binding protein RBP47 10 106 - -
Trme32999g00001 106 MobiDBLite consensus disorder prediction 1 29 - -
Trme32999g00001 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 100 IPR000504 GO:0003723
Trme32999g00001 106 PANTHER RNA PROCESSING PROTEIN LD23810P 17 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32999g00001 Trme-Chr32999 399 1126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32999g00001 25 93 Eukaryotic Initiation Factors Gene Family AT4G34110 37.838 9.01e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32999g00001 - - psat:127079742 199.134