Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32950g00001 ATGTCATTTAATGTTATGTGGAAAGTTCAGGGCACTCTTCCAAGTGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGTTCTGGACAAGGTGGGGCAGAATTTAAGAATGAAGTTCTTGTTGTTGCCAAGCTTCAACACAGAAATTTGGCTAGGCTTCTTGGATTTTGCTTGCAAGGAGAGGAAAAGATACTTGTTTATGAATATGTAGCCAACAAAAGTTTGGACTATACTCTTTTTGATCCCGAAAAGCAAAGTAAACTAGATTGGGCAAGGCGGTACAAGATTATTGAAGGGATCGCTCGTGGCATGCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACACCGTGATCTTAAAGCTAGCAACATATTNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAATAGTTGGAGTTGATCAAACTCAAGGAAACACTAGCAGAATTGTAGGAACTTAG 480 0.3479 MSFNVMWKVQGTLPSGQEIAVKRLSKSSGQGGAEFKNEVLVVAKLQHRNLARLLGFCLQGEEKILVYEYVANKSLDYTLFDPEKQSKLDWARRYKIIEGIARGMQYLHEDSRLRIIHRDLKASNIXXXXXXXXXXXXXXXXXIVGVDQTQGNTSRIVGT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32950g00001 159 FunFam Os07g0541700 protein 70 159 - -
Trme32950g00001 159 FunFam Cysteine-rich receptor-like protein kinase 11 2 69 - -
Trme32950g00001 159 Gene3D Phosphorylase Kinase; domain 1 2 69 - -
Trme32950g00001 159 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 159 - -
Trme32950g00001 159 SUPERFAMILY Protein kinase-like (PK-like) 11 125 IPR011009 -
Trme32950g00001 159 Pfam Protein tyrosine and serine/threonine kinase 15 125 IPR001245 GO:0004672|GO:0006468
Trme32950g00001 159 Gene3D Transferase(Phosphotransferase) domain 1 70 131 - -
Trme32950g00001 159 ProSiteProfiles Protein kinase domain profile. 1 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32950g00001 159 SMART tyrkin_6 9 156 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32950g00001 Trme-Chr32950 231 1105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32950g00001 10 159 Receptor kinase-like Gene Family AT4G23230 68.000 4.97e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme32950g00001 PK_Tyr_Ser-Thr 9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32950g00001 - - pvu:PHAVU_002G049500g 232.646