Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme329201g00001 ATGACTGATTTAGAAGGCATAATAGCAAGAATGGAGGAGCTGCTTAAAGGTCATACACATTTGATCATGACATTCAGAACCTTCCTGCCAAAGGAACATCAAATCACACTTGACGGTAACGATGATAATGATAAGGCTGATGAAGTAAAAATCGAACAGCTTGAAAGAAAGTTATTGGACATTCTTAGAA 190 0.3684 MTDLEGIIARMEELLKGHTHLIMTFRTFLPKEHQITLDGNDDNDKADEVKIEQLERKLLDILR 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme329201g00001 63 SUPERFAMILY PAH2 domain 4 32 IPR036600 GO:0006355
Trme329201g00001 63 Pfam Paired amphipathic helix repeat 3 29 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme329201g00001 Trme-Chr329201 67 256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme329201g00001 3 42 WRKY Transcription Factor Family AT4G12020 50.000 8.93e-09 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme329201g00001 PAH 5.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme329201g00001 - K05636 tpra:123897850 98.5969