Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32906g00001 TCTAATTTTTGGGGAACCAAGTTCACTATATACGACACTCAACCTCCACAAGACGCTGCAGTTCAACCAAATTGTCGGTCAAGCGAGAGATTTAATTCTAAGGTGTCACCAAGAAGTGTTCCAGCATATAACCATCTTGTTAGCACCATTTCCTACGAGTGGCGCACTAAAACACCGAGACGAGTGCACTGCGTCATGAACTCTATACCTGTTTCGGCTATTCAGGAAGGGGGAAATGCTCCGACTCCAGCATCATTACCTCAAATATTTGATGAACCCTTTCCAATGACAGATTCATACTCTACAAGTCGCCTATCAGAGCAACCAGGACTAAACCAAGGCGCAGTCGAGCCCTTGATACTAAAAAACAAGGCCGCCAGATGGGATGATTGGTGCAAGAGTTGGTGCCTAGACTACATGGGTCGGACTATAAAGTCATCCGGAAGAAACTTTCAACTTGTAGCTGATGTTGATCCGTCTCATAATGTTTCGCTTGCGGAGCAAGAAAGGGTAATCTTGAATTTTGGAAAGGTTGGAAAAGATATATTCGTCATGGAGTACTCTTATCCGCTCTCTGCCTTCCAAGCCTTTTCCATCTGCTTGACATCATTCATTTGTAACATGTACAAATCAAAATGCAAAGCTTAA 648 0.4352 SNFWGTKFTIYDTQPPQDAAVQPNCRSSERFNSKVSPRSVPAYNHLVSTISYEWRTKTPRRVHCVMNSIPVSAIQEGGNAPTPASLPQIFDEPFPMTDSYSTSRLSEQPGLNQGAVEPLILKNKAARWDDWCKSWCLDYMGRTIKSSGRNFQLVADVDPSHNVSLAEQERVILNFGKVGKDIFVMEYSYPLSAFQAFSICLTSFICNMYKSKCKA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32906g00001 215 PRINTS Tubby superfamily signature 189 211 IPR000007 -
Trme32906g00001 215 PRINTS Tubby superfamily signature 121 138 IPR000007 -
Trme32906g00001 215 PRINTS Tubby superfamily signature 139 155 IPR000007 -
Trme32906g00001 215 PRINTS Tubby superfamily signature 168 187 IPR000007 -
Trme32906g00001 215 Pfam Tub family 1 204 IPR000007 -
Trme32906g00001 215 Gene3D Tubby Protein; Chain A 1 204 IPR025659 -
Trme32906g00001 215 SUPERFAMILY Tubby C-terminal domain-like 1 204 IPR025659 -
Trme32906g00001 215 PANTHER TUBBY-RELATED 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32906g00001 Trme-Chr32906 139 786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32906g00001 1 204 TUB Transcription Factor Family AT1G25280 42.213 1.80e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme32906g00001 Tub 8.6e-53 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32906g00001 K19600 - gmx:100805380 265.003