Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32886g00001 GTTGTAACTGAGAGGAAGCCAATAAAGGACAAGCCAACTGTAGACAGTGGAAGCAAATCTCGAGGAAGCACCAAGAGATCAAATGATGGGCAAGTTAAAAGCATCCCAAAGTTGGCAGATGATCAAGGTTATGAGGAGGAGGAAGACGAGCATAGTGAAACCCTTTGCGGGACCTGCGGTGGAAACTACAACGCCGATGAATTTTGGATTGGCTGCGATATATGTGAGAGGTGGTACCACGGGAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATGAAGAGGGGCAGACCCTAA 330 0.4697 VVTERKPIKDKPTVDSGSKSRGSTKRSNDGQVKSIPKLADDQGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKRGRP 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32886g00001 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 103 IPR013083 -
Trme32886g00001 109 MobiDBLite consensus disorder prediction 17 31 - -
Trme32886g00001 109 MobiDBLite consensus disorder prediction 1 49 - -
Trme32886g00001 109 PANTHER CPG BINDING PROTEIN 3 108 IPR045104 GO:0006355|GO:0042393
Trme32886g00001 109 FunFam PHD finger alfin-like protein 48 104 - -
Trme32886g00001 109 ProSiteProfiles Zinc finger PHD-type profile. 53 105 IPR019787 -
Trme32886g00001 109 MobiDBLite consensus disorder prediction 1 16 - -
Trme32886g00001 109 SUPERFAMILY FYVE/PHD zinc finger 44 107 IPR011011 -
Trme32886g00001 109 CDD PHD_AL_plant 55 105 IPR044104 -
Trme32886g00001 109 SMART PHD_3 55 103 IPR001965 -
Trme32886g00001 109 ProSitePatterns Zinc finger PHD-type signature. 56 102 IPR019786 -
Trme32886g00001 109 Pfam PHD-finger 56 104 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32886g00001 Trme-Chr32886 286 1133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32886g00001 1 108 Alfin-like Transcription Factor Family AT5G05610 72.477 7.18e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trme32886g00001 PHD 8.5e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32886g00001 K26274 - qsa:O6P43_026231 208.379